RetrogeneDB ID: | retro_acar_125 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:112415318..112415722(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000001932 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSACAG00000014763 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPALRPLIKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MPALRPLIKPKIVKKR.KKFIRHQSDRYVKIKRNW.KPR.IDN.V.RRFKGQILMPNIGYGSNKKTKHML | |
Retrocopy | MPALRPLIKPKIVKKRIKKFIRHQSDRYVKIKRNWHKPRSIDNKVHRRFKGQILMPNIGYGSNKKTKHML |
Parental | PSGFKKFLVHNVKELEVLMMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIK-VTNPNARLRSEENE |
PSGFK.FLVHNVKELEVLMMSNKSYCAEIAHNVSSKN.KVIVERAAQL.IK..TNPNARL.SEENE | |
Retrocopy | PSGFKRFLVHNVKELEVLMMSNKSYCAEIAHNVSSKNLKVIVERAAQLVIK<ITNPNARLLSEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .07 RPM | 3271 .10 RPM |
SRP009831_brain | 0 .05 RPM | 360 .16 RPM |
SRP009831_dewlap | 0 .04 RPM | 479 .50 RPM |
SRP009831_embryo | 0 .00 RPM | 1036 .30 RPM |
SRP009831_heart | 0 .10 RPM | 822 .13 RPM |
SRP009831_liver | 0 .00 RPM | 717 .42 RPM |
SRP009831_lung | 0 .00 RPM | 404 .09 RPM |
SRP009831_ovary | 0 .04 RPM | 339 .10 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 279 .72 RPM |