RetrogeneDB ID: | retro_eeur_19 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_361937:3954..4251(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000005159 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000011107 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.9 % |
Parental protein coverage: | 80.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | HSSKIFSPRSQSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSAGVDAVKEENLKLKSE |
HSSKIFSPR.QSLLPKMMNA.MDAVDAENQ.ELEEKTRLINQVLELQHTLEDLSA.VDAVKEENLKLKSE | |
Retrocopy | HSSKIFSPRPQSLLPKMMNANMDAVDAENQAELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSE |
Parental | NQVLGQYIENLMSASSVFQTTDTKSKRK |
NQVLGQYIE.LMSASSVFQTTDTKSKRK | |
Retrocopy | NQVLGQYIESLMSASSVFQTTDTKSKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 25 .30 RPM | 13 .37 RPM |
SRP017611_kidney | 17 .25 RPM | 16 .69 RPM |
SRP017611_liver | 4 .82 RPM | 2 .09 RPM |