RetrogeneDB ID: | retro_ocun_1657 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018744:2119516..2119721(-) | ||
Located in intron of: | ENSOCUG00000006422 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000006591 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.93 % |
Parental protein coverage: | 55.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SSRI-WHPRPRSLLSKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLS-ARVDAVKEENLKLKS |
SSR..WHPRP.S..SKMM.ADM.A..AE....LEE..R....V..L.HT....S...V.AVKEE.LKL.S | |
Retrocopy | SSRV<WHPRPKSVSSKMMTADMAAPGAETEAPLEETPRFADRVSALRHTHLERS<SAVGAVKEEDLKLTS |
Parental | E |
E | |
Retrocopy | E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .10 RPM | 57 .29 RPM |
SRP017611_kidney | 0 .20 RPM | 86 .25 RPM |
SRP017611_liver | 0 .00 RPM | 2 .16 RPM |