RetrogeneDB ID: | retro_itri_357 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393286.1:7965751..7966114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCOC | ||
Ensembl ID: | ENSSTOG00000028529 | ||
Aliases: | None | ||
Description: | short coiled-coil protein [Source:HGNC Symbol;Acc:20335] |
Percent Identity: | 66.12 % |
Parental protein coverage: | 76.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | QLVQVSRPETSTGILLKKLPRSVDHSSRILHRKSKSFLPKMMSADMDAVDAENQVELEEKTRLINQVLEL |
Q.VQVS.PE.S....L...P...DHS..ILH..SKS.LPKMM.A....VDAENQVEL..KT...NQ.L.. | |
Retrocopy | QFVQVSQPEASS*FHLFLVPHTEDHSPKILHPRSKSLLPKMMNAALSVVDAENQVELQGKT*CNNQELGP |
Parental | QHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR |
QH.L.DLSAR.DAV.EEN.KLKSE.QVLG.YI.NLMSASSVFQT.DTKSK. | |
Retrocopy | QHILKDLSARADAVTEENWKLKSEHQVLG*YIGNLMSASSVFQTNDTKSKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |