RetrogeneDB ID: | retro_dord_359 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_136761:745..1027(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDORG00000001918 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Scoc | ||
Ensembl ID: | ENSDORG00000000177 | ||
Aliases: | None | ||
Description: | short coiled-coil protein [Source:MGI Symbol;Acc:MGI:1927654] |
Percent Identity: | 65.62 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SSGFFCPRRSSVPRMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQ |
SSGF.C.R.SSVPRMMNADMD.VDAENQVELEEK.R....V....HT...LS..........L..KS..Q | |
Retrocopy | SSGFSCLRHSSVPRMMNADMD-VDAENQVELEEKARH*LCVGTPTHTCRFLS-KIRCS*GRKLEVKSQDQ |
Parental | VLGQYIENLMSASSVFQTTDTKSKRK |
V.GQYIENLM.ASSVFQTTD.KSKRK | |
Retrocopy | VFGQYIENLMCASSVFQTTDAKSKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |