RetrogeneDB ID: | retro_cjac_95 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:48818765..48819140(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000032975 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003060 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.83 % |
Parental protein coverage: | 75.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VQVSPPEVSAASFSLPAPPAEDHSARIFYRRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQH |
VQVSPPEVSAAS.SLPAPPAEDHSARIFY.RPKSLLPKMMNA.MDAVDAENQV.LEEKTRLIN.VLELQH | |
Retrocopy | VQVSPPEVSAASLSLPAPPAEDHSARIFYPRPKSLLPKMMNANMDAVDAENQVGLEEKTRLINRVLELQH |
Parental | TLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK |
TLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK | |
Retrocopy | TLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 19 .26 RPM |
SRP051959_heart | 0 .02 RPM | 13 .73 RPM |
SRP051959_kidney | 0 .04 RPM | 20 .90 RPM |
SRP051959_liver | 0 .02 RPM | 13 .04 RPM |
SRP051959_lung | 0 .02 RPM | 11 .75 RPM |
SRP051959_lymph_node | 0 .02 RPM | 9 .00 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 9 .02 RPM |
SRP051959_spleen | 0 .00 RPM | 15 .19 RPM |