RetrogeneDB ID: | retro_etel_1225 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_231588:636..1020(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3 | ||
Ensembl ID: | ENSETEG00000015500 | ||
Aliases: | None | ||
Description: | ribosomal protein S3 [Source:HGNC Symbol;Acc:10420] |
Percent Identity: | 55.64 % |
Parental protein coverage: | 53.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RRIRELTAVVQKRFG-FPEGSVEXXXXXXXXXXXXXXXQAESLRYKLLGGFAVRRACYGVLRFIMESG-A |
RRI..L..VVQK.FG.FP.G...................AE.L.YKLLGGFA.....Y.V..FI.ESG.A | |
Retrocopy | RRIQGLATVVQKTFG<FP*GQCGALCCKGDHRYVCVIALAEFLHYKLLGGFAMS---YSVPWFIAESG>A |
Parental | KGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDP |
K..EVVV..K..GQR.KSM..VDGLM.HSG.P..Y..D.AVRH.LLR.GVLGIKV.I.L.WDP | |
Retrocopy | KS*EVVVPEKF*GQRDKSMICVDGLMVHSGGPSSYNIDVAVRHMLLRPGVLGIKVNIVLLWDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |