RetrogeneDB ID: | retro_sscr_556 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 16:76415308..76415614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3 | ||
Ensembl ID: | ENSSSCG00000014855 | ||
Aliases: | None | ||
Description: | ribosomal protein S3 [Source:HGNC Symbol;Acc:10420] |
Percent Identity: | 52.38 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGVMI |
.KV.TRGLC..AQA.SL.Y..LGGL.V..A.YGVL......G.K.......G....QRAKSMK.V.G.M. | |
Retrocopy | KKVVTRGLCGSAQAKSLYYRFLGGLTVQWA*YGVLGLSW*AGPKSLMPWCLGGFCRQRAKSMKTVGGLMT |
Parental | HSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWD |
H....VN.Y.D..V.HV.LRQG....K..IMLPWD | |
Retrocopy | HA---VNCYADIPVSHVTLRQGTQDVKTQIMLPWD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 518 .18 RPM |
SRP014902_testis | 0 .00 RPM | 1497 .92 RPM |
SRP018288_heart | 0 .00 RPM | 380 .04 RPM |
SRP018288_kidney | 0 .00 RPM | 404 .76 RPM |
SRP018288_liver | 0 .00 RPM | 363 .47 RPM |
SRP018288_lung | 0 .00 RPM | 478 .38 RPM |
SRP018856_adipose | 0 .00 RPM | 2283 .53 RPM |
SRP035408_brain | 0 .00 RPM | 305 .79 RPM |
SRP035408_liver | 0 .00 RPM | 339 .18 RPM |