RetrogeneDB ID: | retro_rnor_283 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:59616331..59617063(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000007605 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps3 | ||
Ensembl ID: | ENSRNOG00000017418 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3 [Source:UniProtKB/Swiss-Prot;Acc:P62909] |
Percent Identity: | 96.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT |
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYS.VEVRVTPTRTEIIIL.TRTQNVLGEKGRRIRELT | |
Retrocopy | MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSRVEVRVTPTRTEIIILGTRTQNVLGEKGRRIRELT |
Parental | AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSG |
AVVQK.F.FPEGSVELYAEKVAT.GLCAIAQAESL.YKLLGGLAVRRACYGVLRFIMESGA.GCEVVVSG | |
Retrocopy | AVVQKQFVFPEGSVELYAEKVATGGLCAIAQAESLCYKLLGGLAVRRACYGVLRFIMESGAEGCEVVVSG |
Parental | KLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSI |
KLRGQRAKS.KFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSI | |
Retrocopy | KLRGQRAKSVKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSI |
Parental | VEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA |
VEPKDEILPTTPISEQKGGKPEP.AMPQPVPTA | |
Retrocopy | VEPKDEILPTTPISEQKGGKPEPHAMPQPVPTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 105 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 128 .33 RPM |
SRP017611_liver | 0 .07 RPM | 89 .16 RPM |