RetrogeneDB ID:

retro_fcat_1490

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:D2:63493953..63494372(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000011942
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_1490
CAGTCTCTGTATTACAAACTCCTAGGAGGCCTCCTTGTGTGGAGGGACTGCTATGGTGTGCTGCGATTCATCATGGTGAG
TGGAACCAAAGGCTGTGAGGTCATGGTGTCTGGGAAGCTCCAAGGACAGTGGGCTAATCCATGAAGTTTGTGGATGGCCT
GATGATTCACAGTGGGGACCCTGTTAACTACTACTTTGACACTGGTGTGTGCCCTGTGCTGCTTAGACAAGGTGTGCTGG
GCATCAAAGTGAAGATCATGCTTCCCTGGGACCCAAGTGGTAAGACTGGCCCTAAGAAGCCCCTGCCAGATCATGTGAGC
ACTGTGGAACCCAAAGATGAGATCCATCCCACCACCCCCATCTCGGAACAGAAGGGTGGGAAGCCAGAGCTGCCTGCTGT
GCTGCAGCCGGCACCCACA

ORF - retro_fcat_1490 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.69 %
Parental protein coverage: 57.61 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAK-SMKFVDGLMIHSGDPVNYYVDTA
.SL.YKLLGGL.V.R.CYGVLRFIM.SG.KGCEV.VSGKL.GQ.A..SMKFVDGLMIHSGDPVNYY.DT.
RetrocopyQSLYYKLLGGLLVWRDCYGVLRFIMVSGTKGCEVMVSGKLQGQWAN<SMKFVDGLMIHSGDPVNYYFDTG
ParentalVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVP
V..VLLRQGVLGIKVKIMLPWDPSGK.GPKKPLPDHVS.VEPKDEI.PTTPISEQKGGKPE.PA..QP.P
RetrocopyVCPVLLRQGVLGIKVKIMLPWDPSGKTGPKKPLPDHVSTVEPKDEIHPTTPISEQKGGKPELPAVLQPAP
ParentalT
T
RetrocopyT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 112 .82 RPM
SRP017611_kidney 0 .41 RPM 406 .87 RPM
SRP017611_liver 0 .10 RPM 187 .72 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1490 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1490 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 30 parental genes, and 97 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000170512 retrocopies
Bos taurus ENSBTAG000000056204 retrocopies
Canis familiaris ENSCAFG000000054022 retrocopies
Choloepus hoffmanni ENSCHOG000000053288 retrocopies
Callithrix jacchus ENSCJAG000000154244 retrocopies
Cavia porcellus ENSCPOG000000046651 retrocopy
Dipodomys ordii ENSDORG000000029742 retrocopies
Equus caballus ENSECAG000000139152 retrocopies
Echinops telfairi ENSETEG000000155003 retrocopies
Felis catus ENSFCAG00000011942 3 retrocopies
retro_fcat_1462, retro_fcat_1490 , retro_fcat_981,
Homo sapiens ENSG000001492734 retrocopies
Gorilla gorilla ENSGGOG000000065194 retrocopies
Loxodonta africana ENSLAFG000000042973 retrocopies
Macropus eugenii ENSMEUG000000115814 retrocopies
Myotis lucifugus ENSMLUG000000040793 retrocopies
Macaca mulatta ENSMMUG000000090196 retrocopies
Monodelphis domestica ENSMODG000000069451 retrocopy
Mustela putorius furoENSMPUG000000091973 retrocopies
Mus musculus ENSMUSG000000307442 retrocopies
Nomascus leucogenys ENSNLEG000000269152 retrocopies
Oryctolagus cuniculus ENSOCUG000000224123 retrocopies
Otolemur garnettii ENSOGAG000000053187 retrocopies
Pongo abelii ENSPPYG000000036884 retrocopies
Pteropus vampyrus ENSPVAG000000112711 retrocopy
Rattus norvegicus ENSRNOG000000174183 retrocopies
Sarcophilus harrisii ENSSHAG000000111981 retrocopy
Sus scrofa ENSSSCG000000148554 retrocopies
Tupaia belangeri ENSTBEG000000070534 retrocopies
Tursiops truncatus ENSTTRG000000058585 retrocopies
Vicugna pacos ENSVPAG000000116152 retrocopies



Copyright © RetrogeneDB 2014-2017