RetrogeneDB ID: | retro_mmul_1816 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:7249535..7250123(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3 | ||
Ensembl ID: | ENSMMUG00000009019 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3 [Source:RefSeq peptide;Acc:NP_001253219] |
Percent Identity: | 85.93 % |
Parental protein coverage: | 81.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYK-LLGGLAV |
EII.L.TRTQNVLGEKG...RELTAVVQKRFGFPEGSVELYAEKVA.RGLCAIAQAE.L.YK..LGGLAV | |
Retrocopy | EIITLVTRTQNVLGEKGWGTRELTAVVQKRFGFPEGSVELYAEKVAARGLCAIAQAECLHYK<TLGGLAV |
Parental | RRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG-I |
.RAC.GVL.FIMESGAKGCEVVVSGKL.G.RAKSMKFVDGLMIHS.DPVNYY.DTAVRHV....G..G.I | |
Retrocopy | QRACCGVLWFIMESGAKGCEVVVSGKL*GHRAKSMKFVDGLMIHSRDPVNYYIDTAVRHV-AQTGCAG>I |
Parental | KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA |
KVKIMLPWDPTGK.GPKKPLPDHVSI.EPKDEILPTTPISEQKGG.PEPPA.PQPVPTA | |
Retrocopy | KVKIMLPWDPTGKTGPKKPLPDHVSIMEPKDEILPTTPISEQKGGEPEPPAVPQPVPTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 136 .25 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 260 .92 RPM |
SRP007412_cerebellum | 0 .00 RPM | 127 .34 RPM |
SRP007412_heart | 0 .24 RPM | 247 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 166 .78 RPM |
SRP007412_liver | 0 .04 RPM | 259 .23 RPM |
SRP007412_testis | 0 .41 RPM | 128 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3552 |