RetrogeneDB ID: | retro_fcat_981 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:91957851..91958297(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000011942 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.67 % |
Parental protein coverage: | 60.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVN |
.C......SLRYK.LGGL.V.R.CY.VL.FIMESGAKGCE.VVSGKL.GQRAKSMKF.DGLM.HS.DPVN | |
Retrocopy | VCVLLPRQSLRYKVLGGLTVWRTCYSVLWFIMESGAKGCELVVSGKLQGQRAKSMKFADGLMTHSEDPVN |
Parental | YYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHV--SIVEPKDEILPTT-PISEQKGGKPE |
.Y.DTAV...LLRQGVLG.KVK.MLP.DPSGK.......P.........P.....P.T.PIS.Q.GGK.E | |
Retrocopy | *YMDTAVCRMLLRQGVLGVKVKSMLPSDPSGKSDQVVRIPCQIM*ALWNPNMRYSPAT<PISGQEGGKSE |
Parental | PPAMPQPVPT |
.PAMPQPVPT | |
Retrocopy | LPAMPQPVPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 112 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 406 .87 RPM |
SRP017611_liver | 0 .00 RPM | 187 .72 RPM |