Parental gene:

RPS3, ENSCAFG00000005402

Aliases:None
Description:40S ribosomal protein S3 [Source:UniProtKB/Swiss-Prot;Acc:E2RH47]
Organism:Dog (Canis familiaris)
Coordinates:21:23181390..23187111(-)


>ENSCAFG00000005402
ATGGCGGTGCAAATTTCCAAGAAGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATGAGTTTCTCACTCG
GGAGCTCGCTGAAGATGGCTACTCTGGGGTTGAGGTCCGAGTTACACCAACCAGGACAGAAATCATTATCCTGGCCACCA
GGACACAGAATGTTCTTGGTGAAAAGGGCCGGAGGATCCGGGAATTGACTGCTGTGGTTCAGAAGAGGTTTGGTTTTCCT
GAGGGCAGTGTAGAGCTCTATGCCGAAAAGGTGGCCACAAGAGGTCTATGTGCTATTGCCCAGGCAGAGTCACTGCGTTA
CAAACTCCTAGGAGGCCTTGCTGTGCGGAGGGCCTGCTATGGTGTGCTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCT
GTGAGGTCGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCTTGATGATTCACAGT
GGAGACCCTGTTAACTACTACGTTGACACCGCTGTGCGCCATGTGCTGCTCAGACAGGGTGTGCTGGGCATCAAAGTCAA
GATCATGCTTCCCTGGGACCCTAGTGGTAAGATTGGCCCTAAGAAGCCCCTGCCAGATCATGTGAGCATTGTGGAACCCA
AGGATGAGATACTGCCCACCACCCCCATCTCGGAACAGAAGGGTGGGAAGCCAGAGCCGCCTGCTATGCCGCAGCCAGTA
CCCACAGCATAA

Library Parental gene expression (RPM)
SRP017611_brain 121 .71 RPM
SRP017611_kidney 880 .28 RPM
SRP017611_liver 225 .15 RPM
SRP012049_cerebellum 328 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017051 ortholog_one2one 2 retrogenes
Bos taurus ENSBTAG00000005620 ortholog_one2one 4 retrogenes
Choloepus hoffmanni ENSCHOG00000005328 ortholog_one2one 8 retrogenes
Callithrix jacchus ENSCJAG00000015424 ortholog_one2many 4 retrogenes
Cavia porcellus ENSCPOG00000004665 ortholog_one2many 1 retrogene
Dipodomys ordii ENSDORG00000002974 ortholog_one2one 2 retrogenes
Equus caballus ENSECAG00000013915 ortholog_one2many 2 retrogenes
Echinops telfairi ENSETEG00000015500 ortholog_one2one 3 retrogenes
Felis catus ENSFCAG00000011942 ortholog_one2one 3 retrogenes
Homo sapiens ENSG00000149273 ortholog_one2one 4 retrogenes
Gorilla gorilla ENSGGOG00000006519 ortholog_one2many 4 retrogenes
Loxodonta africana ENSLAFG00000004297 ortholog_one2one 3 retrogenes
Macropus eugenii ENSMEUG00000011581 ortholog_one2one 4 retrogenes
Myotis lucifugus ENSMLUG00000004079 ortholog_one2many 3 retrogenes
Macaca mulatta ENSMMUG00000009019 ortholog_one2one 6 retrogenes
Monodelphis domestica ENSMODG00000006945 ortholog_one2one 1 retrogene
Mustela putorius furo ENSMPUG00000009197 ortholog_one2one 3 retrogenes
Mus musculus ENSMUSG00000030744 ortholog_one2one 2 retrogenes
Nomascus leucogenys ENSNLEG00000026915 ortholog_one2many 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000022412 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000005318 ortholog_one2one 7 retrogenes
Pongo abelii ENSPPYG00000003688 ortholog_one2one 4 retrogenes
Pteropus vampyrus ENSPVAG00000011271 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000017418 ortholog_one2many 3 retrogenes
Sarcophilus harrisii ENSSHAG00000011198 ortholog_one2one 1 retrogene
Sus scrofa ENSSSCG00000014855 ortholog_one2one 4 retrogenes
Tupaia belangeri ENSTBEG00000007053 ortholog_one2one 4 retrogenes
Tursiops truncatus ENSTTRG00000005858 ortholog_one2one 5 retrogenes
Vicugna pacos ENSVPAG00000011615 ortholog_one2one 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1411 70.47 60.91
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2. retro_cfam_1569 65.46 100.00
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Download FASTA sequences of all ENSCAFG00000005402 retrocopies