RetrogeneDB ID: | retro_etel_857 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_176857:5816..6249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3 | ||
Ensembl ID: | ENSETEG00000015500 | ||
Aliases: | None | ||
Description: | ribosomal protein S3 [Source:HGNC Symbol;Acc:10420] |
Percent Identity: | 61.22 % |
Parental protein coverage: | 59.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAVQISKKRKFVADGIFK-AELNEF-LTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRE |
MAVQISKKRK.VADG.FK.AEL.EF.L..EL.E.G.SGVEV.VTPTR...I...TRTQN.LGEKG..I.E | |
Retrocopy | MAVQISKKRKLVADGLFK<AELKEF<LSEELVEGGFSGVEVQVTPTRAQVIT*DTRTQNALGEKGHQIQE |
Parental | LTAVVQKRFGFPEGSVEXXXXXXXXXXXXXXXQAESLRYKLLGGFAVRRACYGVLRFIMESGAKGCEVVV |
LTAV.QK.FGF.EG.V................QA.S...K.LGG..V.....G.L.FIME.GAKGCEVVV | |
Retrocopy | LTAVIQKKFGFAEGRVVFSAERRASRCLCAIAQAKSQCDKHLGGLTVQKV*HGMLQFIMENGAKGCEVVV |
Parental | SGKLRGQ |
SGKLR.Q | |
Retrocopy | SGKLRTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |