RetrogeneDB ID: | retro_etel_347 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_5738:120487..121559(+) | ||
Located in intron of: | ENSETEG00000000706 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSETEG00000004445 | ||
Aliases: | None | ||
Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
Percent Identity: | 88.06 % |
Parental protein coverage: | 78.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GTVNWSVDDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESA |
GTV.WSVDD.VKGINSNNLESQLQATQAARKLLSR.KQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESA | |
Retrocopy | GTVHWSVDDTVKGINSNNLESQLQATQAARKLLSRAKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESA |
Parental | WALTNIASGTSEQTKAVVEGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSPFRDLVIKYGAVDPLLA |
WALTN.ASGTSEQT.AVVEGGAIPAFIS.L.S.HAHISE.A..AL.NIAGDGSPFRDLVIKY.AV.PLLA | |
Retrocopy | WALTNVASGTSEQTTAVVEGGAIPAFISPLTSLHAHISEPAIRALANIAGDGSPFRDLVIKYSAVVPLLA |
Parental | LLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDG |
LLAVPD.SSLACG.LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV.LLHHDDPEVLAD.CWA.SYLTDG | |
Retrocopy | LLAVPDKSSLACGSLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVHLLHHDDPEVLADICWASSYLTDG |
Parental | PNERIEMVVKTGVVPQLVKLLGATDLPIVT-PALRAIGNIVTGTDEQTQVVIEAGALAVFPSLLTNPK-T |
PNER.EMVV.TGVVPQLVK.LGATDLPIVT..ALRAIGN.VT.TD.QTQVVI.AGALAVFPSLLTN.K.. | |
Retrocopy | PNERTEMVVTTGVVPQLVKSLGATDLPIVT<SALRAIGNVVT*TDAQTQVVIDAGALAVFPSLLTNSK<A |
Parental | NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLIDILTKSDFKTQKEAVWAVTNYTSGGTVEQIVYLVHC |
NIQKEATWTMS.ITAGRQDQIQ...NHGLVPFLID.L.KSDFKTQKEAVWAVT.YTSGGTV.QIV.LVHC | |
Retrocopy | NIQKEATWTMSHITAGRQDQIQPAGNHGLVPFLIDMLRKSDFKTQKEAVWAVTHYTSGGTVDQIVSLVHC |
Parental | GIIEPLMSLL |
G...PLMSLL | |
Retrocopy | GTVKPLMSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |