RetrogeneDB ID: | retro_etel_2148 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_76960:778..1254(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSETEG00000017922 | ||
Aliases: | None | ||
Description: | microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890] |
Percent Identity: | 97.5 % |
Parental protein coverage: | 58.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHE |
MAVNVYSTSVT.DNLSRHDMLAWINESLQLNLTK.EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHE | |
Retrocopy | MAVNVYSTSVTGDNLSRHDMLAWINESLQLNLTKMEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHE |
Parental | YIQNFKILQAGFKRMGVDKIIPVDKLVKG-KFQDNFEFVQWFKKFFDANYDGKDYD-PVAARQGQETAVA |
YIQNFKILQAGFKRMGVDKIIPVDKLVKG.KFQDNFEFVQWFKKFFDANYDGKDYD.PVAARQGQETAVA | |
Retrocopy | YIQNFKILQAGFKRMGVDKIIPVDKLVKG>KFQDNFEFVQWFKKFFDANYDGKDYD>PVAARQGQETAVA |
Parental | PSLVAPALNKPKKPLSTSSA |
PSLVAPALNKPKKPLSTSSA | |
Retrocopy | PSLVAPALNKPKKPLSTSSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013238 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007306 | 13 retrocopies | |
Callithrix jacchus | ENSCJAG00000015601 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000023542 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004499 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017922 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022496 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019445 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027479 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000026557 | 2 retrocopies | |
Sorex araneus | ENSSARG00000002368 | 1 retrocopy | |
Drosophila melanogaster | FBgn0027066 | 1 retrocopy |