Parental gene:

MAPRE1, ENSEEUG00000004499

Aliases:None
Description:microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_1483:4318..25728(+)


>ENSEEUG00000004499
ATGGCAGTGAACGTATACTCCACGTCAGTCACCAGTGATAACTTGAGTCGACATGACATGCTGGCCTGGATCAATGAGTC
CCTACAGTTGAATCTGACAAAGATTGAACAGTTATGCTCAGGGGCTGCCTATTGTCAGTTTATGGATATGCTGTTTCCTG
GCTCCATTGCCTTGAAGAAAGTGAAGTTCCAAGCTAAGCTAGAACATGAATACATCCAGAACTTCAAAATACTACAAGCA
GGTTTTAAAAGGATGGGTGTGGACAAAATAATTCCTGTGGACAAATTGGTCAAAGGAAAGTTCCAAGACAATTTTGAGTT
TGTTCAGTGGTTCAAGAAGTTTTTTGATGCCAACTATGATGGAAAAGAATATGATCCTGTAGCTGCCAGACAAGGTCAAG
AAACTGCGGTGGCTCCCTCTCTTGTTGCTCCAGCTCTCAACAAGCCTAAGAAGCCACTTAGCTCCAGCAGTGCAGCTCCA
CAGAGGCCCATTGCAACACACAGAACTACTGCAACTCCCAAGGCTGCCCCAGGTGTGGTGCGAAAGAATCCTGGTGTGGG
TAACGGTGATGATGAAGCAGCTGAATTGATGCAGCAGGTCAACGTATTGAAACTCACTGTTGAAGATTTAGAAAAAGAAA
AGGATTTCTACTTTGGAAAACTAAGGAATATTGAATTAATTTGCCAGGAGAATGAGGGGGAAAACAACCCTGTATTGCAG
AGGATTGTGGACATTCTGTATGCTACAGATGAAGGCTTTGTGATACCTGATGAAGGTGGACCACAGGAAGAACAAGAAGA
ATATTAA

Library Parental gene expression (RPM)
SRP017611_brain 48 .50 RPM
SRP017611_kidney 43 .70 RPM
SRP017611_liver 9 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013238 possible_ortholog 3 retrogenes
retro_amel_1187, retro_amel_1436, retro_amel_848,
Canis familiaris ENSCAFG00000007306 possible_ortholog 13 retrogenes
retro_cfam_1338, retro_cfam_1554, retro_cfam_1665, retro_cfam_1804, retro_cfam_1808, retro_cfam_2084, retro_cfam_2163, retro_cfam_241, retro_cfam_547, retro_cfam_762, retro_cfam_774, retro_cfam_806, retro_cfam_913,
Callithrix jacchus ENSCJAG00000015601 possible_ortholog 10 retrogenes
retro_cjac_1424, retro_cjac_1647, retro_cjac_1946, retro_cjac_2077, retro_cjac_2084, retro_cjac_2366, retro_cjac_2861, retro_cjac_3259, retro_cjac_3271, retro_cjac_3308,
Cavia porcellus ENSCPOG00000023542 ortholog_one2many 1 retrogene
retro_cpor_194,
Echinops telfairi ENSETEG00000017922 ortholog_one2one 4 retrogenes
retro_etel_1747, retro_etel_1778, retro_etel_2148, retro_etel_222,
Gorilla gorilla ENSGGOG00000022496 possible_ortholog 1 retrogene
retro_ggor_2765,
Monodelphis domestica ENSMODG00000019445 ortholog_one2one 3 retrogenes
retro_mdom_1213, retro_mdom_1946, retro_mdom_431,
Mus musculus ENSMUSG00000027479 ortholog_one2one 2 retrogenes
retro_mmus_3160, retro_mmus_3466,
Otolemur garnettii ENSOGAG00000026557 possible_ortholog 2 retrogenes
retro_ogar_226, retro_ogar_2290,
Sorex araneus ENSSARG00000002368 ortholog_one2one 1 retrogene
retro_sara_380,
Drosophila melanogaster FBgn0027066 ortholog_many2many 1 retrogene
retro_dmel_83,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_179 78.26 68.28
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Download FASTA sequences of all ENSEEUG00000004499 retrocopies