RetrogeneDB ID: | retro_cfam_806 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:37665852..37666676(+) | ||
Located in intron of: | ENSCAFG00000007663 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000030376 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSCAFG00000007306 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris microtubule-associated protein, RP/EB family, member 1 (MAPRE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251946] |
Percent Identity: | 96.01 % |
Parental protein coverage: | 94.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FERDEDGIEAGHRQWTRSRREPK-MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQ |
FE.DEDGIEA.HRQWTRSRREP..MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQ | |
Retrocopy | FEQDEDGIEARHRQWTRSRREPR<MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQ |
Parental | FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFD |
FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRM.VDKIIPVDKLVKGKFQD.FEF.QWFKKFFD | |
Retrocopy | FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMSVDKIIPVDKLVKGKFQDHFEFFQWFKKFFD |
Parental | ANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPGV |
ANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPG.VRKNP.V | |
Retrocopy | ANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGEVRKNPDV |
Parental | GNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEG |
GNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE.ENN.VLQRIVDILYATDEG | |
Retrocopy | GNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENERENNLVLQRIVDILYATDEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .13 RPM | 13 .57 RPM |
SRP017611_brain | 0 .00 RPM | 8 .10 RPM |
SRP017611_kidney | 14 .13 RPM | 7 .59 RPM |
SRP017611_liver | 6 .16 RPM | 1 .74 RPM |