RetrogeneDB ID: | retro_cfam_547 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:31309123..31309927(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSCAFG00000007306 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris microtubule-associated protein, RP/EB family, member 1 (MAPRE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251946] |
Percent Identity: | 94.4 % |
Parental protein coverage: | 92.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QWTRSRREPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK |
QWT.SRREPKMAVNV.STS.TSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK | |
Retrocopy | QWTWSRREPKMAVNVHSTSITSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK |
Parental | VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAAR |
VKFQAKLEHEYIQNFKILQ.GFK.MGVDK..PVDKLVKG.FQDNFEFVQWFKKFFDANYDGKDYDPVAAR | |
Retrocopy | VKFQAKLEHEYIQNFKILQEGFK*MGVDKTVPVDKLVKGNFQDNFEFVQWFKKFFDANYDGKDYDPVAAR |
Parental | QGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPGVGNGDDEAAELMQQV |
QGQETAV...LVAPAL.KPKKPLSSS.AAPQRP.ATHRTTATPKAG.GVVRKNPGVGNGDDEAAELMQQV | |
Retrocopy | QGQETAVVLFLVAPALDKPKKPLSSSRAAPQRPTATHRTTATPKAGLGVVRKNPGVGNGDDEAAELMQQV |
Parental | NVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPDE |
NVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPDE | |
Retrocopy | NVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 13 .57 RPM |
SRP017611_brain | 0 .00 RPM | 8 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .59 RPM |
SRP017611_liver | 0 .00 RPM | 1 .74 RPM |