RetrogeneDB ID: | retro_cfam_913 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:2196962..2197823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSCAFG00000007306 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris microtubule-associated protein, RP/EB family, member 1 (MAPRE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251946] |
Percent Identity: | 97.56 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DEDGIEAGHRQWTRSRREPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDM |
DEDGIEAGHRQ.TRSRREPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDM | |
Retrocopy | DEDGIEAGHRQRTRSRREPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDM |
Parental | LFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD |
LFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFV.W.KKFFDANYD | |
Retrocopy | LFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFV*WCKKFFDANYD |
Parental | GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPGVGNGD |
GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVV.KNPGVGNGD | |
Retrocopy | GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVQKNPGVGNGD |
Parental | DEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPDEGG |
DEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRI.DIL.ATDEGFVIPDEGG | |
Retrocopy | DEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIMDILSATDEGFVIPDEGG |
Parental | PQEEQEE |
.QEEQEE | |
Retrocopy | QQEEQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 13 .57 RPM |
SRP017611_brain | 0 .00 RPM | 8 .10 RPM |
SRP017611_kidney | 0 .07 RPM | 7 .59 RPM |
SRP017611_liver | 0 .00 RPM | 1 .74 RPM |