RetrogeneDB ID: | retro_cfam_1808 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:672809..673679(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000016564 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSCAFG00000007306 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris microtubule-associated protein, RP/EB family, member 1 (MAPRE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251946] |
Percent Identity: | 96.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FERDEDGIEAGHRQWTRSRREPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQF |
FER.EDGIEA.HRQWTRSRR.PKMAVNVYST.VTSDNLSR.DMLAWINESLQLNLTKI.QLCSGAAYC.F | |
Retrocopy | FERNEDGIEARHRQWTRSRR*PKMAVNVYSTFVTSDNLSRRDMLAWINESLQLNLTKIAQLCSGAAYCRF |
Parental | MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA |
MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRM.VDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA | |
Retrocopy | MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMNVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA |
Parental | NYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPGVG |
NYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAG.GVVRKNPGVG | |
Retrocopy | NYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGSGVVRKNPGVG |
Parental | NGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD |
NGDDEAAELMQQVNVLKLTVEDL.KERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD | |
Retrocopy | NGDDEAAELMQQVNVLKLTVEDLDKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD |
Parental | EGGPQEEQEE |
EGGPQEEQEE | |
Retrocopy | EGGPQEEQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 13 .57 RPM |
SRP017611_brain | 0 .00 RPM | 8 .10 RPM |
SRP017611_kidney | 0 .13 RPM | 7 .59 RPM |
SRP017611_liver | 0 .44 RPM | 1 .74 RPM |