RetrogeneDB ID: | retro_cfam_1804 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:62836113..62836934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSCAFG00000007306 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris microtubule-associated protein, RP/EB family, member 1 (MAPRE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251946] |
Percent Identity: | 75.27 % |
Parental protein coverage: | 95.17 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | WTRSRREP-KMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK |
W..S..EP.KMAVNVYS..VTSDNL..HDMLAWIN.SLQL.LTKI.QLC...AYCQFMDML..GSIALKK | |
Retrocopy | WLQSV*EP<KMAVNVYSMLVTSDNLN*HDMLAWINKSLQLKLTKIKQLCLEPAYCQFMDMLVLGSIALKK |
Parental | VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYD-PVAA |
VKF.AKLEHEY.QNF.IL.AGFKRM.VDKII.VDK.VK......FEFVQWFKKFFDAN.DGKDY..PVA. | |
Retrocopy | VKFHAKLEHEYTQNFEIL*AGFKRMDVDKIINVDKSVK-IISGHFEFVQWFKKFFDANFDGKDYT<PVAD |
Parental | RQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPGVGNGDDEAAELMQQ |
RQGQETAVAPSLVAPAL.KP..PLSSSSAAPQ.PIATHRTT.TP.A..GVV.K.PG.GN.D...AELM.Q | |
Retrocopy | RQGQETAVAPSLVAPALSKPERPLSSSSAAPQTPIATHRTTVTPHASLGVV*KIPGMGNRDEAEAELMPQ |
Parental | VNVLKLTVEDLEKERDFYFGK-LRNIELICQENEGENNPVLQRIVDILYATDEGFVIPDEGGPQEEQEE |
VN.L.LT....E..R.F...K.LRNIEL.C.ENE.ENNP.LQRIVDILYATDEGFVIP.E.GPQEEQEE | |
Retrocopy | VNILILTI*E*ERKR-FLLWK>LRNIELVCRENEEENNPLLQRIVDILYATDEGFVIPHEAGPQEEQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 13 .57 RPM |
SRP017611_brain | 0 .00 RPM | 8 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .59 RPM |
SRP017611_liver | 0 .00 RPM | 1 .74 RPM |