RetrogeneDB ID: | retro_fcat_1067 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:117299964..117300764(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEST | ||
Ensembl ID: | ENSFCAG00000022984 | ||
Aliases: | None | ||
Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 83.13 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | VVGSPEIVVLLHGFPT-SSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHHYSIFEQASIVEALLRH |
VVGSPEIVVLLHG..T..SYD...IWE..TLRFH.VIALDF.GFGFS.K.RPH.YS.FEQA.IVEAL... | |
Retrocopy | VVGSPEIVVLLHGLLT>CSYD**RIWE--TLRFHQVIALDFVGFGFSNKLRPHYYSMFEQARIVEALSWY |
Parental | LGLQNRRINLLSHDYGDIVAQELLYRFKQNRSGRLTIKSLCLSNG-GIFPETHRPLLLQKLLKDGGVLSP |
LG.QN.RINLLSHDYGDIVAQELL.RF.QNRSGRLTI.SL.LSNG.GIFPET.RPLLLQK.LKDGG..SP | |
Retrocopy | LGFQNHRINLLSHDYGDIVAQELLCRFRQNRSGRLTIRSLYLSNG>GIFPETYRPLLLQKFLKDGGMMSP |
Parental | ILTRLMNFFVFSRGLTPVFGPYTRPSESELWDMWAGIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASV |
ILTRLMNFFVFS.GL.PVF..YTR.S.SE.WDMWAGI..NDG.LVIDSLLQYIN.RK.FRR.W.GALAS. | |
Retrocopy | ILTRLMNFFVFS*GLIPVFRLYTRLSKSEPWDMWAGI*HNDGSLVIDSLLQYINLRKTFRRCWMGALASL |
Parental | TIPIHFIYGPLDPVNPYPEFLELYRKTLPRSTVSILDDHISHYPQLEDPMGFLNAYMGFINSF |
T.PIHFIYGPLD...P...............TVSILDDH.SHYPQL.DP.GFL.A.MGF.NSF | |
Retrocopy | TVPIHFIYGPLD---PINPLSRVFGAVQENTTVSILDDHVSHYPQLGDPLGFLTACMGFLNSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .01 RPM |
SRP017611_liver | 0 .00 RPM | 2 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005659 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010760 | 2 retrocopies | |
Felis catus | ENSFCAG00000022984 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000006066 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008227 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006129 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009499 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012841 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009224 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018006 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019698 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000502 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020977 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008404 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004934 | 4 retrocopies |