Parental gene:

MMU.716, ENSMMUG00000009499

Aliases:None
Description:mesoderm specific transcript homolog [Source:RefSeq peptide;Acc:NP_001247871]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:167876834..167897871(+)


>ENSMMUG00000009499
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTGTTGGCCGTGCCCCTGCTTGCTGC
GTACCTGCACATCCCACCCCCTCAGCTCTCCCCTGCCCTTCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGG
GACTGCGTATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCAGAGATAGTTGTGCTTTTACACGGTTTTCCAACA
TCCAGCTACGATTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCCCTTGATTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAAGCACTTTTGCGGCATC
TGGGGCTCCAGAACCGCAGGATCAACCTTCTTTCTCATGACTATGGAGATACGGTTGCTCAGGAGCTTCTCTACAGGTAC
AAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCC
ACTCCTTCTCCAAAAGCTACTCAAAGACGGAGGTGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTCGTGTTCT
CTCGAGGTCTCACCCCAGTCTTTGGGCCGTATACTCGGCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGC
AACAATGACGGGAACTTAGTCATTGACAGTCTCTTACAGTACATCAATCAGCGGAAGAAGTTCAGAAGGCGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATCCCCATTCATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA

Library Parental gene expression (RPM)
SRP007412_brain 32 .16 RPM
SRP007412_brain_prefrontal_cortex 45 .22 RPM
SRP007412_cerebellum 18 .60 RPM
SRP007412_heart 8 .95 RPM
SRP007412_kidney 9 .51 RPM
SRP007412_liver 15 .56 RPM
SRP007412_testis 17 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005659 ortholog_one2many 2 retrogenes
retro_amel_1177, retro_amel_1874,
Callithrix jacchus ENSCJAG00000010760 ortholog_many2many 2 retrogenes
retro_cjac_1563, retro_cjac_3931,
Felis catus ENSFCAG00000022984 ortholog_one2many 5 retrogenes
retro_fcat_1067, retro_fcat_1645, retro_fcat_1693, retro_fcat_2004, retro_fcat_326,
Loxodonta africana ENSLAFG00000006066 ortholog_one2many 3 retrogenes
retro_lafr_578, retro_lafr_584, retro_lafr_748,
Macropus eugenii ENSMEUG00000008227 ortholog_one2many 1 retrogene
retro_meug_885,
Microcebus murinus ENSMICG00000006129 ortholog_one2many 1 retrogene
retro_mmur_1091,
Nomascus leucogenys ENSNLEG00000012841 ortholog_one2many 3 retrogenes
retro_nleu_1065, retro_nleu_515, retro_nleu_790,
Otolemur garnettii ENSOGAG00000009224 ortholog_one2many 1 retrogene
retro_ogar_3464,
Pongo abelii ENSPPYG00000018006 ortholog_one2many 4 retrogenes
retro_pabe_2337, retro_pabe_2510, retro_pabe_2511, retro_pabe_866,
Pan troglodytes ENSPTRG00000019698 ortholog_one2many 2 retrogenes
retro_ptro_1769, retro_ptro_2045,
Sorex araneus ENSSARG00000000502 ortholog_one2many 1 retrogene
retro_sara_352,
Ictidomys tridecemlineatus ENSSTOG00000020977 ortholog_one2many 2 retrogenes
retro_itri_1210, retro_itri_1610,
Tupaia belangeri ENSTBEG00000008404 ortholog_one2many 2 retrogenes
retro_tbel_1480, retro_tbel_526,
Tursiops truncatus ENSTTRG00000004934 ortholog_one2many 4 retrogenes
retro_ttru_1026, retro_ttru_1115, retro_ttru_1133, retro_ttru_1907,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_94 96.33 97.61
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2. retro_mmul_1936 77.63 89.55
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Download FASTA sequences of all ENSMMUG00000009499 retrocopies