RetrogeneDB ID: | retro_fcat_1270 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:55330730..55331241(+) | ||
Located in intron of: | ENSFCAG00000018094 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSFCAG00000014497 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540] |
Percent Identity: | 67.05 % |
Parental protein coverage: | 83.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | QAQMVTTDFQKIFP-MGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKR |
QAQ..TTD.QKIFP.M.D.LYI.LAGL.T.VQT.A..LKF..N.YEL..G.QIKP.T.MS.VANLL.EK. | |
Retrocopy | QAQVITTDSQKIFP<MADWLYIRLAGLTTNVQTTALHLKFWMNVYEL*YGWQIKP*TFMSIVANLLSEK* |
Parental | FGPYYTEPVIAGLDPKTFKPFI-CSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETIS |
FG.YYT..VI..L.P..FKPFI.C.LDLI..P.VTDDF.V...C..QMYG..ESLWEPNM..EHLFE.I. | |
Retrocopy | FGQYYTDLVIDQLVPQIFKPFI<CPLDLISYPTVTDDFLVISICDKQMYGIYESLWEPNMNLEHLFEFI* |
Parental | QAMLNAVDRDAVSGMGVIVHVIEKDRITTRTLK |
Q.ML.A.D.DAVS..GVIVH.IEKD.ITT.TLK | |
Retrocopy | QDMLKAMDQDAVSDIGVIVHIIEKDKITTTTLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .55 RPM |
SRP017611_liver | 0 .00 RPM | 16 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004363 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016587 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015275 | 1 retrocopy | |
Felis catus | ENSFCAG00000014497 | 3 retrocopies |
retro_fcat_1270 , retro_fcat_1442, retro_fcat_784,
|
Gorilla gorilla | ENSGGOG00000007067 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002233 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004131 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012363 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012614 | 2 retrocopies | |
Mus musculus | ENSMUSG00000069744 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000012938 | 7 retrocopies | |
Tupaia belangeri | ENSTBEG00000013010 | 2 retrocopies |