RetrogeneDB ID: | retro_fcat_1442 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:56369918..56370522(-) | ||
Located in intron of: | ENSFCAG00000007459 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSFCAG00000014497 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540] |
Percent Identity: | 77.29 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | IMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFP-MGDRLYIGLAGLATDVQTVAQRLKFRL |
IMSYNGG...AM.G.NCV.IAA.R..GIQAQMVTTDFQKIFP....RLYIGLA.LAT.VQT.AQ.LKF.L | |
Retrocopy | IMSYNGGTITAMQGENCVVIAANRHLGIQAQMVTTDFQKIFP<LEGRLYIGLARLATEVQTAAQHLKFQL |
Parental | NLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEP-VIAGLDPKTFKPFICSLDLIGCPMVTD-DFVVS |
.LYELKEG.QIKPY.LMS.V.NL.YEK.FGP.YTEP..I.GLDPKTFK.FICSLDL.G.PM.TD.DFVVS | |
Retrocopy | SLYELKEGWQIKPYILMSTVDNLSYEKWFGPFYTEP<IISGLDPKTFKHFICSLDLTG-PMLTD>DFVVS |
Parental | GTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNA-VDRDAVSGMGVIVHVIEKDRITTRTLKARMD |
GTCSEQ.YGM.ESL.EP.MDPEHL.ETI.QAM.NA..DRDAVSGMGV.VH.IEKD.ITTRTLKA.MD | |
Retrocopy | GTCSEQTYGMHESLREPTMDPEHLSETILQAMMNA<LDRDAVSGMGVTVHIIEKDKITTRTLKACMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .55 RPM |
SRP017611_liver | 0 .00 RPM | 16 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004363 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016587 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015275 | 1 retrocopy | |
Felis catus | ENSFCAG00000014497 | 3 retrocopies |
retro_fcat_1270, retro_fcat_1442 , retro_fcat_784,
|
Gorilla gorilla | ENSGGOG00000007067 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002233 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004131 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012363 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012614 | 2 retrocopies | |
Mus musculus | ENSMUSG00000069744 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000012938 | 7 retrocopies | |
Tupaia belangeri | ENSTBEG00000013010 | 2 retrocopies |