RetrogeneDB ID: | retro_fcat_1582 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:46441547..46441871(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSFCAG00000007748 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 55.86 % |
Parental protein coverage: | 52.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSTEAQRVDDSP-STSGGSSDGDQRESVQQEPEREQ---VQPKKKEGKISSKTAAKLSTSAKRIQKE-LA |
MS...QR.DD...STS.G.SD.DQ.E.....PE.E........KK..K.SSKT.AKLSTSA.RIQ.E.LA | |
Retrocopy | MSGDRQRSDDEGCSTSHGGSDADQ*EPAPLKPEEERKPSATQQKKHPKVSSKTTAKLSTSAERIQSE>LA |
Parental | EITLDPPPNCSHGPKGDNI-YEWRSTILGPPGSVYEGGVFF |
E..LD..PNC..GPKGDNI.YE.R.T.LGPPGS.......F | |
Retrocopy | ERALD-SPNCGIGPKGDNI<YERRPTTLGPPGSEFFPDISF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .02 RPM |
SRP017611_liver | 0 .00 RPM | 5 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010341 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005448 | 7 retrocopies | |
Felis catus | ENSFCAG00000007748 | 2 retrocopies |
retro_fcat_1582 , retro_fcat_913,
|
Felis catus | ENSFCAG00000008008 | 1 retrocopy | |
Felis catus | ENSFCAG00000024719 | 1 retrocopy | |
Felis catus | ENSFCAG00000024918 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016799 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000025144 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010615 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000005156 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007007 | 3 retrocopies |