RetrogeneDB ID: | retro_fcat_785 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:100678254..100678470(-) | ||
Located in intron of: | ENSFCAG00000026443 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D3 | ||
Ensembl ID: | ENSFCAG00000024918 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476] |
Percent Identity: | 77.03 % |
Parental protein coverage: | 50.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT |
M.LK.INK..SDLA.DP.AQCSAGPVG.DMFH.QATIMGPND.PY.G.VFFLTI.FP.D...KPPKVAFT | |
Retrocopy | MGLKWINK--SDLAHDPLAQCSAGPVGEDMFHQQATIMGPNDGPY*GSVFFLTIRFPIDSSLKPPKVAFT |
Parental | TRIY |
.RIY | |
Retrocopy | RRIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 173 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 195 .09 RPM |
SRP017611_liver | 0 .10 RPM | 151 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000018711 | 2 retrocopies | |
Ciona savignyi | ENSCSAVG00000006136 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014658 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000001291 | 3 retrocopies | |
Felis catus | ENSFCAG00000007748 | 2 retrocopies | |
Felis catus | ENSFCAG00000008008 | 1 retrocopy | |
Felis catus | ENSFCAG00000024719 | 1 retrocopy | |
Felis catus | ENSFCAG00000024918 | 2 retrocopies |
retro_fcat_1106, retro_fcat_785 ,
|
Gorilla gorilla | ENSGGOG00000001368 | 2 retrocopies | |
Mus musculus | ENSMUSG00000078578 | 11 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000005415 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014967 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015438 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000024306 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029822 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013481 | 6 retrocopies | |
Tupaia belangeri | ENSTBEG00000000270 | 5 retrocopies |