RetrogeneDB ID: | retro_fcat_913 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:80418081..80418515(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSFCAG00000007748 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 69.39 % |
Parental protein coverage: | 72.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SSKTAAKLSTSA-KRIQKELAEITLDPPPNCSHGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDY |
S.KT.AKL.TS..KR.QKEL.E.....PPNC..GPK.D.IYEW..TILGPP.SV.EGGV.FLDITFS.DY | |
Retrocopy | SRKTTAKLPTSCVKRLQKELTEVIHVSPPNCHAGPKAD-IYEWKLTILGPPASVCEGGVVFLDITFSSDY |
Parental | PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSL-LTDCNPADPLVGSIATQYMT |
P.KPPKVTF.TRIYH.NINS.G.ICL.ILKDNWSP..TISK.LL..CSL.LT.CN.AD..VGSIA..Y.. | |
Retrocopy | PCKPPKVTFHTRIYHYNINS*GLICLYILKDNWSPTWTISKILLLTCSL<LTVCNSADTPVGSIASLYLR |
Parental | NRAEHDR |
NR.E.D. | |
Retrocopy | NRTERDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .02 RPM |
SRP017611_liver | 0 .00 RPM | 5 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010341 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005448 | 7 retrocopies | |
Felis catus | ENSFCAG00000007748 | 2 retrocopies |
retro_fcat_1582, retro_fcat_913 ,
|
Felis catus | ENSFCAG00000008008 | 1 retrocopy | |
Felis catus | ENSFCAG00000024719 | 1 retrocopy | |
Felis catus | ENSFCAG00000024918 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016799 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000025144 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010615 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000005156 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007007 | 3 retrocopies |