RetrogeneDB ID: | retro_fcat_932 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:121216980..121217646(-) | ||
Located in intron of: | ENSFCAG00000030644 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSFCAG00000001621 | ||
Aliases: | None | ||
Description: | homeobox protein NANOG [Source:RefSeq peptide;Acc:NP_001166913] |
Percent Identity: | 77.97 % |
Parental protein coverage: | 72.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MNTDPAQPQCPPCPEAPDSRDSSPVPEIDGPEENYA-PLRMSSAETPHTETVSPLPSCM-DLLAQGSPDS |
MN.DP.Q.QCPPCPEAP.SRDSSP.PEI.GPEENYA.P.R.SSAE.P.TE.VSPLPS.M..LL.Q.S..S | |
Retrocopy | MNVDPVQAQCPPCPEAPNSRDSSPMPEIYGPEENYA>PCR-SSAEIPYTEAVSPLPSSM<GLLIQDSFVS |
Parental | STSPRVKVLPTSAEEITAKKDDPAQGKKQKIRTVFSQTQLYVLNDRFQRQKYLSLQQMQELSNILNLSYK |
STSPRVK.LPT..EE.T.KK.D.A.GKKQKIRTVFSQTQLYVLNDR.QRQKYLSLQQMQELSNI.NLSYK | |
Retrocopy | STSPRVKPLPTFVEESTVKKEDMARGKKQKIRTVFSQTQLYVLNDRSQRQKYLSLQQMQELSNIPNLSYK |
Parental | QVKTWFQNQRMKCKRWQKNNWPKNNNTVSQNSSANPEYPGFYSYHQGYLMNTSGNLPIWGNQTWNSQSWS |
QVK.W.QNQRMKCKRWQ..NWPKN.N...QN.SA..EYPGF.SYHQGYL.NTSGNLPIW.NQTWNSQSWS | |
Retrocopy | QVKSWSQNQRMKCKRWQ--NWPKNSNSMTQNGSATAEYPGFSSYHQGYLTNTSGNLPIWSNQTWNSQSWS |
Parental | NQTWNSQSWSNQTWNSQ |
N..WNS..W..Q.WNSQ | |
Retrocopy | NHFWNS*TWCPQAWNSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .10 RPM | 0 .00 RPM |