RetrogeneDB ID: | retro_ocun_971 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:37449721..37450288(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSOCUG00000013783 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 62.24 % |
Parental protein coverage: | 64.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSVDPACPASLPASEALDDQDSSLMPVVPEPEGKHPTLQLPCAQVPLTDTASPLPSSMDLPTQESPDSST |
MSVDPAC..SLP.SE..D..DS...P..P.P...HPTLQ.P......T.TASPL.S.MDL..Q.SPDSS. | |
Retrocopy | MSVDPACSQSLPGSEEADVKDSTPKPIMPGPA*NHPTLQMPSTEMSHTGTASPLHSCMDLLVQDSPDSSS |
Parental | SPSPRVVKTPDSAEKSTKKEEKVKKQKIRTVFSQTQLCVLNDRFQRQKYLSLQQMQELSSLLNLSYKQVK |
..SPR..K.P.SAE......EKVKKQK.RTV.S.TQLCVL.DRFQ...YLSLQQ.Q.LS..LNLS.KQV. | |
Retrocopy | --SPRG-KAPISAE----RREKVKKQKVRTVLSYTQLCVLSDRFQTHIYLSLQQTQTLSNILNLSHKQVG |
Parental | TWFQNQRMKCKRWQRNNWPNICNSVTQKGSGPAEYPGFYPAYHQGCLVNTPGSLPM |
T.FQNQRM..K.WQRNNWP.....VTQ.GS..AEYPG....YHQGCLVNT.G.LP. | |
Retrocopy | TLFQNQRMQYK*WQRNNWPKTISRVTQEGSALAEYPGCCSSYHQGCLVNTSGNLPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |