RetrogeneDB ID: | retro_fcat_970 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:72420893..72421524(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSFCAG00000007783 | ||
Aliases: | None | ||
Description: | microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890] |
Percent Identity: | 78.14 % |
Parental protein coverage: | 78.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | VNVYSTSVTSDNLSRHDML-AWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEY |
.NVYSTSVTS.NL..HDML.AW.NESLQLNLT.I.QL.S..AY.QFM.MLF.GSIALKKVKF..KLEHEY | |
Retrocopy | LNVYSTSVTSNNLRQHDML>AWVNESLQLNLTMIKQLHSVTAYHQFMGMLFLGSIALKKVKFHTKLEHEY |
Parental | IQNFKILQAGFKRMGVDKIIPVDKLVK-GKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPS |
IQNFKILQAGFK..G.DKIIPVDKL.K.G.FQ.NFEFVQWFK.FFDANYDGKDYDP.AARQG..T.VA.S | |
Retrocopy | IQNFKILQAGFKTIGIDKIIPVDKLEK<GNFQGNFEFVQWFKNFFDANYDGKDYDPIAARQGEKTLVAHS |
Parental | LVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKN-PGVGNGDDEAAEL-MQQVNVLKLTVE |
LVAPALNK.KK.LSS.SAAPQRP..THRTTATPK...G.V.KN..GVGN.DDE.A...MQQVNVLKL.VE | |
Retrocopy | LVAPALNKLKKLLSSRSAAPQRPSVTHRTTATPKVDLGLVLKN<SGVGNWDDETANR<MQQVNVLKLNVE |
Parental | DLEKE |
DLEKE | |
Retrocopy | DLEKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .44 RPM |
SRP017611_liver | 0 .00 RPM | 7 .08 RPM |