RetrogeneDB ID:

retro_ggor_1301

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:17:41652815..41653482(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000001103
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:AK4
Ensembl ID:ENSGGOG00000026644
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1301
GTGGCTTCCAAACTCCTGCGCGCGGTCATCCTCAGACCCCCCTGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCA
GAACTTTGGCTTCCAGGATTTCTCCAGTGGGCACTTCTTGTGGGAGAACATCAAGGCCAAAACCGAAGTTGGTGAGATGG
CAAAACAGTATATAGAGAAAAGTCTTTTGGTTCCAGACCATGTGATCACACGCCTAATGATGTCTGAGTTGGAGAATAGC
CGTGGCCAGCACTGGCTCCTCGATGGTTTTCCTAGGACATTACGACAAGCCGAAGCCCTGGACAAAAATCTGTGAACTGG
ATTTAGTAATTAGTTTGAAGATTCCATTTGAAACACTTAAAGATCGTCTCGGCTGCTGTTGGATTCACCCTCCTAGCGGA
AGGGTATATAACATGGACTTCAATCCACCTCATGTACATGGGATTGATGACGTCACTGGTGAACCGTTAGTCCAGCAGGA
GGATGATAAACCTGAAGCAGTTGCTGCCAGGCTAAGGCAGTACAAGGATATGGCAAAGCCAGTCATTGAATTATACTAGA
GCCGAGGAGTTCTCCAATTTTCTGGGACAGAGACGAACAAAATCTGGCCCTATGTTTACACACTTTTCTCGAACATGATC
ACACCTGTTCAGTCCAAAGAAGCATAT

ORF - retro_ggor_1301 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.18 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT
.ASKLLRAVIL.PP.SGKGTVCQRIAQNFG.Q..SSGHFL.ENIKA.TEVGEMAKQYIEKSLLVPDHVIT
RetrocopyVASKLLRAVILRPPCSGKGTVCQRIAQNFGFQDFSSGHFLWENIKAKTEVGEMAKQYIEKSLLVPDHVIT
ParentalRLMMSELENRRGQHWLLDGFPRTLGQAEALD-KICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLD
RLMMSELEN.RGQHWLLDGFPRTL.QAEALD.KICE.DLVISL.IPFETLKDRL...WIHPPSGRVYN.D
RetrocopyRLMMSELENSRGQHWLLDGFPRTLRQAEALD>KICELDLVISLKIPFETLKDRLGCCWIHPPSGRVYNMD
ParentalFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTL
FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD.AKPVIELY.SRGVL.QFSGTETNKIWPYVYTL
RetrocopyFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDMAKPVIELY*SRGVL-QFSGTETNKIWPYVYTL
ParentalFSNKITPIQSKEAY
FSN.ITP.QSKEAY
RetrocopyFSNMITPVQSKEAY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 9 .49 RPM
SRP007412_cerebellum 0 .00 RPM 10 .80 RPM
SRP007412_heart 0 .00 RPM 3 .66 RPM
SRP007412_kidney 0 .00 RPM 116 .82 RPM
SRP007412_liver 0 .00 RPM 10 .79 RPM
SRP007412_testis 0 .62 RPM 9 .32 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1301 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1301 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3320
Pan troglodytes retro_ptro_2154
Pongo abelii retro_pabe_2735
Macaca mulatta retro_mmul_2080

Parental genes homology:
Parental genes homology involve 12 parental genes, and 50 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000168351 retrocopy
Homo sapiens ENSG000001624336 retrocopies
Gorilla gorilla ENSGGOG00000026644 4 retrocopies
Gorilla gorilla ENSGGOG000000281223 retrocopies
Myotis lucifugus ENSMLUG000000096221 retrocopy
Macaca mulatta ENSMMUG000000010793 retrocopies
Mus musculus ENSMUSG000000285271 retrocopy
Nomascus leucogenys ENSNLEG000000151633 retrocopies
Otolemur garnettii ENSOGAG000000160241 retrocopy
Ochotona princeps ENSOPRG0000001034517 retrocopies
Pongo abelii ENSPPYG000000012696 retrocopies
Pan troglodytes ENSPTRG000000008274 retrocopies



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