Parental gene:

AK4, ENSPTRG00000000827

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:65739793..65820455(+)


>ENSPTRG00000000827
ATGGCTTCCAAACTCCTGCGCGCGGTCATCCTCGGGCCGCCCGGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCA
GAACTTTGGTCTCCAGCATCTCTCCAGCGGCCACTTCTTGCGGGAGAACATCAAGGCCAGCACCGAAGTTGGTGAGATGG
CAAAGCAGTATATAGAGAAAAGTCTTTTGGTTCCAGACCATGTGATCACACGCCTAATGATGTCCGAGTTGGAGAATAGG
CGTGGCCAGCACTGGCTCCTTGATGGTTTTCCTAGGACATTAGGACAAGCCGAAGCCCTGAACAAAATCTGTGAAGTGGA
TCTAGTGATCAGTTTGAATATTCCATTTGAAACACTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAGCGGAA
GGGTATATAACCTGGACTTCAATCCACCTCATGTACATGGTATTGATGACGTCACTGGTGAACCATTAGTCCAGCAGGAG
GATGATAAACCCGAAGCAGTTGCTGCCAGGCTAAGACAGTACAAAGACGTGGCAAAGCCAGTCATTGAATTATACAAGAG
CCGAGGAGTGCTCCACCAATTTTCCGGAACGGAGACGAACAAAATCTGGCCCTACGTTTACACACTTTTCTCAAACAAGA
TCACACCTATTCAGTCCAAAGAAGCATATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .79 RPM
SRP007412_cerebellum 23 .30 RPM
SRP007412_heart 21 .66 RPM
SRP007412_kidney 169 .07 RPM
SRP007412_liver 20 .95 RPM
SRP007412_testis 8 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016835 ortholog_one2one 1 retrogene
retro_cjac_1856,
Homo sapiens ENSG00000162433 ortholog_one2one 6 retrogenes
retro_hsap_1101, retro_hsap_1744, retro_hsap_2993, retro_hsap_3320, retro_hsap_3619, retro_hsap_4225,
Gorilla gorilla ENSGGOG00000026644 ortholog_one2one 4 retrogenes
retro_ggor_1301, retro_ggor_2073, retro_ggor_2444, retro_ggor_2829,
Myotis lucifugus ENSMLUG00000009622 ortholog_one2one 1 retrogene
retro_mluc_1708,
Macaca mulatta ENSMMUG00000001079 ortholog_one2one 3 retrogenes
retro_mmul_104, retro_mmul_1680, retro_mmul_2080,
Mus musculus ENSMUSG00000028527 ortholog_one2one 1 retrogene
retro_mmus_1933,
Nomascus leucogenys ENSNLEG00000015163 ortholog_one2one 3 retrogenes
retro_nleu_1666, retro_nleu_2481, retro_nleu_743,
Otolemur garnettii ENSOGAG00000016024 ortholog_one2one 1 retrogene
retro_ogar_3375,
Ochotona princeps ENSOPRG00000010345 ortholog_one2one 17 retrogenes
retro_opri_1094, retro_opri_153, retro_opri_291, retro_opri_328, retro_opri_357, retro_opri_417, retro_opri_438, retro_opri_442, retro_opri_666, retro_opri_724, retro_opri_73, retro_opri_743, retro_opri_752, retro_opri_765, retro_opri_889, retro_opri_892, retro_opri_947,
Pongo abelii ENSPPYG00000001269 ortholog_one2one 6 retrogenes
retro_pabe_1021, retro_pabe_2479, retro_pabe_2735, retro_pabe_2970, retro_pabe_3412, retro_pabe_3483,
Pan troglodytes ENSPTRG00000020742 within_species_paralog 5 retrogenes
retro_ptro_1785, retro_ptro_2180, retro_ptro_2895, retro_ptro_416, retro_ptro_796,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2024 93.26 79.37
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2. retro_ptro_2154 89.73 100.00
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3. retro_ptro_2449 73.73 52.02
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4. retro_ptro_2870 77.24 54.26
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Download FASTA sequences of all ENSPTRG00000000827 retrocopies