RetrogeneDB ID: | retro_hsap_1101 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:31768704..31769373(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233381 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AK4 | ||
Ensembl ID: | ENSG00000162433 | ||
Aliases: | AK4, AK 4, AK3, AK3L1, AK3L2 | ||
Description: | adenylate kinase 4 [Source:HGNC Symbol;Acc:363] |
Percent Identity: | 99.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT |
MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGE.AKQYIEKSLLVPDHVIT | |
Retrocopy | MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEVAKQYIEKSLLVPDHVIT |
Parental | RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDF |
RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDF | |
Retrocopy | RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDF |
Parental | NPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLF |
NPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD.AKPVIELYKSRGVLHQFSGTETNKIWPYVYTLF | |
Retrocopy | NPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDAAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLF |
Parental | SNKITPIQSKEAY |
SNKITPIQSKEAY | |
Retrocopy | SNKITPIQSKEAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .16 RPM | 47 .11 RPM |
bodymap2_adrenal | 0 .14 RPM | 30 .17 RPM |
bodymap2_brain | 0 .00 RPM | 62 .19 RPM |
bodymap2_breast | 0 .08 RPM | 119 .90 RPM |
bodymap2_colon | 0 .04 RPM | 84 .90 RPM |
bodymap2_heart | 0 .00 RPM | 148 .32 RPM |
bodymap2_kidney | 0 .04 RPM | 289 .75 RPM |
bodymap2_liver | 0 .00 RPM | 90 .68 RPM |
bodymap2_lung | 0 .04 RPM | 10 .74 RPM |
bodymap2_lymph_node | 0 .42 RPM | 30 .15 RPM |
bodymap2_ovary | 0 .00 RPM | 26 .87 RPM |
bodymap2_prostate | 0 .00 RPM | 88 .71 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 5 .49 RPM |
bodymap2_testis | 0 .04 RPM | 61 .39 RPM |
bodymap2_thyroid | 0 .00 RPM | 16 .29 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016835 | 1 retrocopy | |
Homo sapiens | ENSG00000147853 | 3 retrocopies | |
Homo sapiens | ENSG00000162433 | 6 retrocopies |
retro_hsap_1101 , retro_hsap_1744, retro_hsap_2993, retro_hsap_3320, retro_hsap_3619, retro_hsap_4225,
|
Gorilla gorilla | ENSGGOG00000026644 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000009622 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001079 | 3 retrocopies | |
Mus musculus | ENSMUSG00000028527 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015163 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000016024 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010345 | 17 retrocopies | |
Pongo abelii | ENSPPYG00000001269 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000000827 | 4 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .16 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .14 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .14 RPM |
CEU_NA12873 | 0 .13 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .22 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .11 RPM |
FIN_HG00349 | 0 .09 RPM |
FIN_HG00375 | 0 .27 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .11 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .09 RPM |
GBR_HG00114 | 0 .13 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .11 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .19 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .12 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .06 RPM |