RetrogeneDB ID: | retro_opri_752 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_28094:12320..12859(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AK4 | ||
Ensembl ID: | ENSOPRG00000010345 | ||
Aliases: | None | ||
Description: | adenylate kinase 4 [Source:HGNC Symbol;Acc:363] |
Percent Identity: | 84.53 % |
Parental protein coverage: | 81. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VLGPPGSGKGTVCQMIAQNFGLQHLSSGH-LRENIKTNTEVGGMAKKYLERGLLVPDHVITRLMLSELES |
..G.PGS.K.T.CQMI.QNFGL.HLSSGH.L.E.IK..TEVG.MAKKYLERG.LVPDHVIT.LMLSELES | |
Retrocopy | IIGLPGSNKSTMCQMITQNFGLKHLSSGHFLQEDIKASTEVGNMAKKYLERGHLVPDHVITYLMLSELES |
Parental | RSDQHWLLSGFPRTLAQAEALDKI-CDLDLVITLNIPFETLKDRLSRRWIHPPSGRVYNMDFNPPHVHGI |
RS.QHWLL.GFPRTL.QAEAL.KI.CDLDLVIT.NIPFETLKD.LSR.WIHPPS.RVYNMDFNPPHV.GI | |
Retrocopy | RSGQHWLLDGFPRTLVQAEALNKI<CDLDLVITINIPFETLKDQLSRHWIHPPSRRVYNMDFNPPHVLGI |
Parental | DDITGEALIQQEEDKPEAVAARLRRYKDTAKPVIELYKSRG |
DDITGEALIQQEE.KPEAVAA.LRRYKDTAKPVIELYKSRG | |
Retrocopy | DDITGEALIQQEEGKPEAVAAWLRRYKDTAKPVIELYKSRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016835 | 1 retrocopy | |
Homo sapiens | ENSG00000162433 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000026644 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000009622 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001079 | 3 retrocopies | |
Mus musculus | ENSMUSG00000028527 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015163 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000016024 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010345 | 17 retrocopies | |
Pongo abelii | ENSPPYG00000001269 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000000827 | 4 retrocopies |