Parental gene:

MMU.811, ENSMMUG00000001079

Aliases:AK4, AK3, AK3L1
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:67939178..68018975(+)


>ENSMMUG00000001079
ATGGCTTCCAAACTCCTGCGCGCGGTCATCCTCGGGCCGCCCGGCTCGGGAAAGGGCACCGTGTGCCAGAGGATCGCCCA
GAACTTTGGCCTCCAGCATCTCTCCAGCGGCCACTTCTTGCGGGAGAACATCAAGGCCAACACCGAAGTTGGTGAGATGG
CAAAGCAGTATATAGAGAGAAGTCTTTTGGTTCCAGACCATGTGATCACACGCCTAATGATGTCTGAGTTGGAGAATAGG
CGTGGCCAGCACTGGCTCCTTGATGGTTTTCCTAGGACATTAGGACAAGCCGAAGCCCTCGACAAAATCTGTGAAGTGGA
TCTAGTGATCAGTTTGAACATTCCATTTGAAACACTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAGCGGAA
GGGTATATAACCTGGACTTCAATCCACCTCATGTACATGGTATTGATGACGTCACTGGTGAGCCATTAGTCCAGCAGGAG
GATGATAAACCTGAAGCAGTTGCTGCCAGGCTAAGACAGTACAAAGACGTGGCAAAGCCAGTCATTGAATTATACAAGAG
CCGAGGAGTGCTCCACCAATTTTCCGGGACGGAGACGAACAAAATCTGGCCCTACGTTTACACACTTTTCTCGAACAAGA
TCACACCTATTCAGTCCAAAGAAGCATATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .60 RPM
SRP007412_brain 6 .05 RPM
SRP007412_cerebellum 8 .59 RPM
SRP007412_heart 6 .65 RPM
SRP007412_kidney 57 .98 RPM
SRP007412_liver 16 .07 RPM
SRP007412_testis 0 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014969 possible_ortholog 1 retrogene
retro_amel_728,
Bos taurus ENSBTAG00000030674 possible_ortholog 1 retrogene
retro_btau_782,
Callithrix jacchus ENSCJAG00000016835 ortholog_one2many 1 retrogene
retro_cjac_1856,
Homo sapiens ENSG00000162433 ortholog_one2one 6 retrogenes
retro_hsap_1101, retro_hsap_1744, retro_hsap_2993, retro_hsap_3320, retro_hsap_3619, retro_hsap_4225,
Gorilla gorilla ENSGGOG00000026644 ortholog_one2one 4 retrogenes
retro_ggor_1301, retro_ggor_2073, retro_ggor_2444, retro_ggor_2829,
Myotis lucifugus ENSMLUG00000009622 ortholog_one2many 1 retrogene
retro_mluc_1708,
Macaca mulatta ENSMMUG00000000143 within_species_paralog 2 retrogenes
retro_mmul_2032, retro_mmul_898,
Mus musculus ENSMUSG00000028527 ortholog_one2many 1 retrogene
retro_mmus_1933,
Nomascus leucogenys ENSNLEG00000015163 ortholog_one2one 3 retrogenes
retro_nleu_1666, retro_nleu_2481, retro_nleu_743,
Otolemur garnettii ENSOGAG00000016024 ortholog_one2many 1 retrogene
retro_ogar_3375,
Ochotona princeps ENSOPRG00000010345 ortholog_one2many 17 retrogenes
retro_opri_1094, retro_opri_153, retro_opri_291, retro_opri_328, retro_opri_357, retro_opri_417, retro_opri_438, retro_opri_442, retro_opri_666, retro_opri_724, retro_opri_73, retro_opri_743, retro_opri_752, retro_opri_765, retro_opri_889, retro_opri_892, retro_opri_947,
Pongo abelii ENSPPYG00000001269 ortholog_one2one 6 retrogenes
retro_pabe_1021, retro_pabe_2479, retro_pabe_2735, retro_pabe_2970, retro_pabe_3412, retro_pabe_3483,
Pan troglodytes ENSPTRG00000000827 ortholog_one2one 4 retrogenes
retro_ptro_2024, retro_ptro_2154, retro_ptro_2449, retro_ptro_2870,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_104 91.72 69.96
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2. retro_mmul_1680 92.79 99.55
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3. retro_mmul_2080 87.65 72.20
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Download FASTA sequences of all ENSMMUG00000001079 retrocopies