RetrogeneDB ID: | retro_mmul_1680 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:58232620..58233286(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.811 | ||
Ensembl ID: | ENSMMUG00000001079 | ||
Aliases: | AK4, AK3, AK3L1 | ||
Description: | None |
Percent Identity: | 92.79 % |
Parental protein coverage: | 99.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKANTEVGEMAKQYIERSLLVPDHVIT |
.ASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS.HFL.ENIKANTEVGE.A.QYIERSLLVPDHVIT | |
Retrocopy | VASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSSHFLGENIKANTEVGETA*QYIERSLLVPDHVIT |
Parental | RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDF |
RLMMSELENRRGQHWLLDGFPRTLGQAEALD.I.EVDLVISLNIPFETLKDRLSR..IHPPSGRVYNLDF | |
Retrocopy | RLMMSELENRRGQHWLLDGFPRTLGQAEALDQIYEVDLVISLNIPFETLKDRLSRH*IHPPSGRVYNLDF |
Parental | NPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLF |
N.PHVHGIDDVTGEPLVQQEDDKPEAVAA.LRQYK.VAKPVIELYKSRGVLHQFSGTETNKIWPY.YTLF | |
Retrocopy | NQPHVHGIDDVTGEPLVQQEDDKPEAVAAKLRQYKVVAKPVIELYKSRGVLHQFSGTETNKIWPYIYTLF |
Parental | SNKITPIQSKEA |
SNKITP.QSK.. | |
Retrocopy | SNKITPFQSKRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 6 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 9 .60 RPM |
SRP007412_cerebellum | 0 .45 RPM | 8 .59 RPM |
SRP007412_heart | 0 .00 RPM | 6 .65 RPM |
SRP007412_kidney | 0 .23 RPM | 57 .98 RPM |
SRP007412_liver | 0 .16 RPM | 16 .07 RPM |
SRP007412_testis | 0 .19 RPM | 0 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014969 | 1 retrocopy | |
Bos taurus | ENSBTAG00000030674 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016835 | 1 retrocopy | |
Homo sapiens | ENSG00000162433 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000026644 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000009622 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000143 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001079 | 3 retrocopies |
retro_mmul_104, retro_mmul_1680 , retro_mmul_2080,
|
Mus musculus | ENSMUSG00000028527 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015163 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000016024 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010345 | 17 retrocopies | |
Pongo abelii | ENSPPYG00000001269 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000000827 | 4 retrocopies |