RetrogeneDB ID:

retro_ggor_1726

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2b:58588633..58589569(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000026007
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF2S2
Ensembl ID:ENSGGOG00000015546
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1726
CCTTTTATGTTGGATGAGGAAGGGGATACCCAAACAGAGGAAACCCAGCCTTCAGAAACAAAAGAAGTGGAGCCAGAGCC
AACTGAGGACAAAGATTTGGAAGCTGATAAAGAGGACACTAGGAAAAAAGATGCTTCTGATGATCTAGATGACTTGAACT
TCTTTAATCAAAAGAAAAAGAAGAAAAAAACTAAACAGATATTTGATATTGATGAAGCTGAAGAAGGTGTAAAGGATCTT
AAGATTGAAAGTGATGTTCAAGAACCAACTGAACCAGAGGATGACCTTGACATTATGCTTGACAATAAAAAGAAGAAAAA
GAAGAATGTTAAGTTCCCAGATGAGGATGAAATACTAGAGAAAGATGAAGCTCTAGAAGATGAAGACAACAAAAAAGATG
ACGGTATCTCATTCAGTAATCAGACAGGCCCTGCTTGGGCAGGCTCAGAAAGAGACTACACATACGAGGAGCTGCTGAAT
CGAGTGTTCAACATCATGAGGGAAAAGAATCCAGATATGGTTGCTGGGGAGAAAAGGAAATTTGTCATGAAACCTCCACA
AGTCGTCCGAGTAGGAACCAAGAAAACTTCTTTTGTCAACTTTACAGATATCTGTAAACTATTACATCGTCAGCCCAAAC
ATCTCCTTGCATTTTTATTGGCTGAATTGGGTACAAGTGGTTCTATAGATGGTAATAACCAACTTGTAATCAAAGGAAGA
TTCCAACAGAAACAGATAGAAAATGTCTTGAGAAGATATATCAAGGAATATGTCACTTGTCACACATGCCGATCACCGGA
CACAATCCTGCAGAAGGACACACGACTTTATTTCCTACAGTGCGAAACTTGTCATTCTAGATGTTCTGTTGCCATTATCA
AAACCGGCTTCCAGGCTGTCATGGGCAAGCGAGCACAGCTCCGTGCCAAAGCTAAC

ORF - retro_ggor_1726 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.59 %
Parental protein coverage: 96.3 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEEDTRKKDASDDLDDLNFFNQKKKKKKTKKIFDI
PFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEAD.EDTRKKDASDDLDDLNFFN........K.IFDI
RetrocopyPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADKEDTRKKDASDDLDDLNFFNXXXXXXXXKQIFDI
ParentalDEAEEGVKDLKIESDVQEPTEPEDDLDIMLGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSN
DEAEEGVKDLKIESDVQEPTEPEDDLDIML.N.......VKFPDEDEILEKDEALEDEDNKKDDGISFSN
RetrocopyDEAEEGVKDLKIESDVQEPTEPEDDLDIMLDNXXXXXXXVKFPDEDEILEKDEALEDEDNKKDDGISFSN
ParentalQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHR
QTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHR
RetrocopyQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHR
ParentalQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQ
QPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQ
RetrocopyQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQ
ParentalCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
CETCHSRCSVA.IKTGFQAV.GKRAQLRAKAN
RetrocopyCETCHSRCSVAIIKTGFQAVMGKRAQLRAKAN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .34 RPM 21 .34 RPM
SRP007412_cerebellum 0 .43 RPM 20 .37 RPM
SRP007412_heart 0 .09 RPM 8 .69 RPM
SRP007412_kidney 0 .53 RPM 41 .34 RPM
SRP007412_liver 0 .61 RPM 25 .32 RPM
SRP007412_testis 1 .45 RPM 52 .63 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1726 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1726 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2176

Parental genes homology:
Parental genes homology involve 13 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000183342 retrocopies
Cavia porcellus ENSCPOG000000154391 retrocopy
Echinops telfairi ENSETEG000000019221 retrocopy
Homo sapiens ENSG000001259773 retrocopies
Gorilla gorilla ENSGGOG00000015546 5 retrocopies
Microcebus murinus ENSMICG000000069441 retrocopy
Macaca mulatta ENSMMUG000000180951 retrocopy
Monodelphis domestica ENSMODG000000028055 retrocopies
Nomascus leucogenys ENSNLEG000000100342 retrocopies
Otolemur garnettii ENSOGAG000000014171 retrocopy
Pongo abelii ENSPPYG000000109332 retrocopies
Pan troglodytes ENSPTRG000000134122 retrocopies
Rattus norvegicus ENSRNOG000000174471 retrocopy



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