RetrogeneDB ID: | retro_hsap_2260 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:57275921..57276471(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000271115 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF2S2 | ||
Ensembl ID: | ENSG00000125977 | ||
Aliases: | EIF2S2, EIF2, EIF2B, EIF2beta, PPP1R67, eIF-2-beta | ||
Description: | eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa [Source:HGNC Symbol;Acc:3266] |
Percent Identity: | 65.78 % |
Parental protein coverage: | 55.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEEDTRKKDASDDLD |
SGD.MIFDPTMS....KKKK.FMLDE.GDT.TEE..PS..KE.EPEPTEDKDLEADEED.RK.DA.DD.D | |
Retrocopy | SGDKMIFDPTMSR---KKKKSFMLDEGGDT*TEES*PSKIKEMEPEPTEDKDLEADEEDNRKRDAYDDPD |
Parental | DLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIMLGNKKKKKKNVKFPDEDEILE |
DL.FFN.............ID..EE.VK.LK.ESD..EP.EP.DDLDIM...KKK.K.N..F.DE...LE | |
Retrocopy | DLIFFNXXXXXXXXXXXLHIDGGEEDVKVLKTESDI*EPAEPGDDLDIMFVDKKKEKRNFRFTDENKLLE |
Parental | KDEALEDEDN-KKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIM |
KDEA....D..KKDD.ISFSNQTG..WA..ERDYTYE.LLNRVF.IM | |
Retrocopy | KDEA*KIKDS>KKDDVISFSNQTGSIWASLERDYTYEKLLNRVFHIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 85 .12 RPM |
bodymap2_adrenal | 0 .00 RPM | 97 .50 RPM |
bodymap2_brain | 0 .00 RPM | 64 .25 RPM |
bodymap2_breast | 0 .00 RPM | 65 .00 RPM |
bodymap2_colon | 0 .00 RPM | 100 .30 RPM |
bodymap2_heart | 0 .00 RPM | 46 .08 RPM |
bodymap2_kidney | 0 .00 RPM | 69 .80 RPM |
bodymap2_liver | 0 .00 RPM | 56 .61 RPM |
bodymap2_lung | 0 .00 RPM | 109 .70 RPM |
bodymap2_lymph_node | 0 .00 RPM | 73 .37 RPM |
bodymap2_ovary | 0 .00 RPM | 114 .99 RPM |
bodymap2_prostate | 0 .00 RPM | 77 .73 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 121 .91 RPM |
bodymap2_testis | 0 .00 RPM | 91 .55 RPM |
bodymap2_thyroid | 0 .00 RPM | 105 .98 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 71 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1600 |
Pongo abelii | retro_pabe_1955 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018334 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015439 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001922 | 1 retrocopy | |
Homo sapiens | ENSG00000125977 | 3 retrocopies |
retro_hsap_2176, retro_hsap_2260 , retro_hsap_713,
|
Gorilla gorilla | ENSGGOG00000015546 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006944 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018095 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002805 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010034 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001417 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013412 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017447 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |