RetrogeneDB ID: | retro_pabe_2421 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3_random:18408135..18408824(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF2S2 | ||
Ensembl ID: | ENSPPYG00000010933 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 2 subunit 2 [Source:RefSeq peptide;Acc:NP_001127646] |
Percent Identity: | 72.1 % |
Parental protein coverage: | 69.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKE-VEPEPTEDKDLEADEEDTRKKDASDD |
.SGDEMIFDPTMS.....................ETQPS......EP.PTEDKDLEAD.ED.RK.DASDD | |
Retrocopy | ISGDEMIFDPTMSXXXXXXXXSLLC*MRKGIPKQETQPSXXXX<LEPGPTEDKDLEADNEDSRKNDASDD |
Parental | LDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIMLGNKKKKKKNVKFPDEDEI |
LD.LNFFN...K......IFDIDE.EEGVKDLKIESDVQEP.EP.DDLDIMLGN.......VKFPD.DEI | |
Retrocopy | LDHLNFFN--RKXXXXXXIFDIDEVEEGVKDLKIESDVQEPAEPADDLDIMLGNXXXXXXXVKFPDKDEI |
Parental | LEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQV |
LEKDEALEDED.KKDDGISFSN..GPAWAGSE.DYT..ELLN.VFNIMREKNPDMVAGEK.KFVM.PPQV | |
Retrocopy | LEKDEALEDEDSKKDDGISFSN*VGPAWAGSEGDYT*DELLNCVFNIMREKNPDMVAGEKKKFVMQPPQV |
Parental | VRVGTKKTSFVNFTDICKLLHRQ |
.RVGTKKT.FVNFTDICKLLH.Q | |
Retrocopy | IRVGTKKTFFVNFTDICKLLHCQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .39 RPM | 37 .98 RPM |
SRP007412_cerebellum | 1 .34 RPM | 51 .80 RPM |
SRP007412_heart | 0 .66 RPM | 35 .25 RPM |
SRP007412_kidney | 1 .09 RPM | 39 .01 RPM |
SRP007412_liver | 0 .31 RPM | 44 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007498 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006521 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018334 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015439 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001922 | 1 retrocopy | |
Homo sapiens | ENSG00000125977 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015546 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006944 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005335 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018095 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002805 | 5 retrocopies | |
Mus musculus | ENSMUSG00000074656 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010034 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001417 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010933 | 2 retrocopies |
retro_pabe_1955, retro_pabe_2421 ,
|
Pan troglodytes | ENSPTRG00000013412 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017447 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009970 | 2 retrocopies |