RetrogeneDB ID: | retro_rnor_2395 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:116725102..116725613(-) | ||
Located in intron of: | ENSRNOG00000027317 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif2s2 | ||
Ensembl ID: | ENSRNOG00000017447 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 2 subunit 2 [Source:RefSeq peptide;Acc:NP_955412] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 52.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSGDEMIFDPTMSKKKKKKKKPF-MLDEEGDAQTEETQPSETKEVEPEPAEEKDVEADEEDSRKKDASDD |
MSGDEMIFDPTMS.........F.MLDEE.DAQTEETQPSETKEVEPEP.EEKDVEA.EED..KK.ASDD | |
Retrocopy | MSGDEMIFDPTMSXXXXXXXXXF>MLDEESDAQTEETQPSETKEVEPEPTEEKDVEA-EEDGGKKGASDD |
Parental | LDDLNFFNQKKKKKKTKKIFDIDEAEEAIKDVKIESDAQEPAEPEDDLDIMLGNKKKKKKNVKFPDEDEI |
LDDL.FFNQK.K...TKKIFDIDEAEEAIKDVKIESDAQEPAE.EDDLDIMLG.KKKKKKNVKFPDEDE. | |
Retrocopy | LDDLSFFNQKRK---TKKIFDIDEAEEAIKDVKIESDAQEPAELEDDLDIMLGSKKKKKKNVKFPDEDEV |
Parental | LEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDY |
LEKDEALEDEDSKKDDGISFSNQTGPAWAGSERD. | |
Retrocopy | LEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 47 .16 RPM |
SRP017611_kidney | 0 .14 RPM | 56 .45 RPM |
SRP017611_liver | 0 .13 RPM | 40 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007498 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006521 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018334 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015439 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001922 | 1 retrocopy | |
Homo sapiens | ENSG00000125977 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015546 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006944 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005335 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018095 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002805 | 5 retrocopies | |
Mus musculus | ENSMUSG00000074656 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010034 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001417 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013412 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017447 | 1 retrocopy |
retro_rnor_2395 ,
|
Tupaia belangeri | ENSTBEG00000009970 | 2 retrocopies |