RetrogeneDB ID: | retro_ggor_604 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:105828931..105829669(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024168 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF2S2 | ||
Ensembl ID: | ENSGGOG00000015546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.43 % |
Parental protein coverage: | 75.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIMLGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGI |
.FDIDEAEEGVKDLKIESDVQEPTEPE.DLDIMLGN.......VKFPDEDEILEKDE.LE.ED.KKDDGI | |
Retrocopy | VFDIDEAEEGVKDLKIESDVQEPTEPENDLDIMLGNXXXXXXXVKFPDEDEILEKDEVLEEEDSKKDDGI |
Parental | SFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICK |
SFSNQTGPAWAGSERDYTYEELLNRVFNIMREK.PDMVAGE.RKFVMKPPQVVRVGTKKTSFVNFT.ICK | |
Retrocopy | SFSNQTGPAWAGSERDYTYEELLNRVFNIMREKKPDMVAGEIRKFVMKPPQVVRVGTKKTSFVNFTHICK |
Parental | LLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRL |
LLH.QPKHL.AFLLAELGT.GSIDGNNQLVIKGRFQQKQ.ENVLRRYIKEYVTCHTCR..DTILQKDTR. | |
Retrocopy | LLHHQPKHLRAFLLAELGTNGSIDGNNQLVIKGRFQQKQTENVLRRYIKEYVTCHTCRLLDTILQKDTRI |
Parental | YFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN |
YFLQCETCHSRCSVASIKTG.QAV.GK.A.LRAKAN | |
Retrocopy | YFLQCETCHSRCSVASIKTGYQAVMGK*AHLRAKAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 21 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .37 RPM |
SRP007412_heart | 0 .03 RPM | 8 .69 RPM |
SRP007412_kidney | 0 .16 RPM | 41 .34 RPM |
SRP007412_liver | 0 .18 RPM | 25 .32 RPM |
SRP007412_testis | 0 .10 RPM | 52 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_713 |
Pan troglodytes | retro_ptro_508 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018334 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015439 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001922 | 1 retrocopy | |
Homo sapiens | ENSG00000125977 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015546 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006944 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018095 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002805 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010034 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001417 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013412 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017447 | 1 retrocopy |