RetrogeneDB ID:

retro_nleu_2242

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397338.1:6241702..6242281(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000011139
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF2S2
Ensembl ID:ENSNLEG00000010034
Aliases:None
Description:eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa [Source:HGNC Symbol;Acc:3266]


Retrocopy-Parental alignment summary:






>retro_nleu_2242
GAGAAAGATGAAGCTCTAGAAGATGAAGACAAGAAAAAAGATGATGGCATCTCATTCAGTAATCAGACAGGCCCTGCTTG
GGTAGGCTCAGAAAGAGACTACACATACGAGCAGCTGCTGAATCGAGTGTTCAACATCATGAGGGAAAAGAATCCAGATA
TGGTTGCTGGGGAGAAAAGGAAATTTGTCACGAAACCTCCACAGATCGTCCGAGTAGGAACCAAGAAAACTTCTTTTGTC
AACTTTACAGATATCTGTAAACTATTACATCATCAGCCCAAACATCTCCTTGCATTTTTGTTGGCTGAATTGGGTACAAG
TGGTTCTTTGGATGGTAATAACCAACTTGTAATCAAAGGAAGATTCCAATGGAAACAGATAGAAAATGTCTTGAGAAGAT
ATACCAAGGAATATGTCACTTGTCACACATACCGATCACCGGACACAATCCTGTAGAAGGACACGCGACTCTATTTCCTA
CAGTACGAAACTTGTCATTCTAGATGTTCTATTGCCAGTATCAAAACCGGCTTCCAGGCTGTCATGGGGAAGCGAGCACA
GTTCCGTGCCAAAGCTAAC

ORF - retro_nleu_2242 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.06 %
Parental protein coverage: 59.27 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDEDEILEKDEGNAEDSAAHLEVTQAFGPGLLDGGELYT-PALLNRVFNIMREKNPDMVAGEKRKFVMKPP
..DE.LE.......D.......T...GP........YT...LLNRVFNIMREKNPDMVAGEKRKFV.KPP
RetrocopyEKDEALEDEDKKKDDGISFSNQT---GPAWVGSERDYTYEQLLNRVFNIMREKNPDMVAGEKRKFVTKPP
ParentalQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKE
Q.VRVGTKKTSFVNFTDICKLLH.QPKHLLAFLLAELGTSGS.DGNNQLVIKGRFQ.KQIENVLRRY.KE
RetrocopyQIVRVGTKKTSFVNFTDICKLLHHQPKHLLAFLLAELGTSGSLDGNNQLVIKGRFQWKQIENVLRRYTKE
ParentalYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
YVTCHT.RSPDTIL.KDTRLYFLQ.ETCHSRCS.ASIKTGFQAV.GKRAQ.RAKAN
RetrocopyYVTCHTYRSPDTIL*KDTRLYFLQYETCHSRCSIASIKTGFQAVMGKRAQFRAKAN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2242 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000183342 retrocopies
Cavia porcellus ENSCPOG000000154391 retrocopy
Echinops telfairi ENSETEG000000019221 retrocopy
Homo sapiens ENSG000001259773 retrocopies
Gorilla gorilla ENSGGOG000000155465 retrocopies
Microcebus murinus ENSMICG000000069441 retrocopy
Macaca mulatta ENSMMUG000000180951 retrocopy
Monodelphis domestica ENSMODG000000028055 retrocopies
Nomascus leucogenys ENSNLEG00000010034 2 retrocopies
retro_nleu_2242 , retro_nleu_466,
Otolemur garnettii ENSOGAG000000014171 retrocopy
Pongo abelii ENSPPYG000000109332 retrocopies
Pan troglodytes ENSPTRG000000134122 retrocopies
Rattus norvegicus ENSRNOG000000174471 retrocopy



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