Parental gene:

ENSCJAG00000018334

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:3200391..3223614(+)


>ENSCJAG00000018334
ATGTCTGGGGACGAGATGATTTTTGATCCTACCATGAGCAAGAAGAAGAAGAAGAAGAAGAAGCCTTTTATGTTAGATGA
GGAAGGGGATACCCAAACAGAGGAAACCCAGCCTTCAGAAACAAAAGAAGTGGAGCCAGAGCCAACTGAGGACAAAGATT
TGGAAGCTGATGAAGAGGACAGTAGGAAAAAAGATGCTTCTGATGATCTAGATGACTTAAACTTCTTTAATCAAAAGAAA
AAGAAGAAAAAAACTAAAAAGATATTTGATATTGATGAAGCTGAAGAAGGCGTAAAGGACCTTAAGATTGAAAGTGATGT
TCAAGAACCAGCTGAACCAGAGGATGACCTTGACATTATGCTTGGCAATAAAAAGAAGAAAAAGAAGAATGTCAAGTTCC
CAGATGAGGATGAAATACTAGAGAAAGATGAAGCTCTAGAAGATGAAGACAGCAAAAAAGATGATGGCATCTCATTCAGT
AATCAGACAGGCCCTGCTTGGGCAGGCTCAGAAAGAGATTACACATATGAGGAGCTGCTGAATCGAGTGTTCAACATCAT
GAGGGAAAAGAATCCAGATATGGTTGCTGGGGAGAAAAGGAAATTTGTCATGAAACCTCCACAGGTCGTCCGAGTAGGAA
CCAAGAAAACTTCTTTTGTCAACTTTACAGATATCTGTAAACTATTACATCGTCAGCCCAAACATCTCCTTGCATTTTTG
TTGGCTGAATTGGGTACAAGTGGTTCTATAGATGGTAATAACCAACTTGTAATCAAAGGAAGATTCCAACAGAAACAGAT
AGAAAATGTCTTAAGAAGATATATCAAGGAATATGTCACTTGTCACACATGCCGATCACCAGACACAATCCTGCAGAAGG
ACACGCGACTCTATTTCCTACAGTGCGAAACTTGTCATTCTAGATGTTCTGTTGCCAGTATCAAAACCGGCTTCCAGGCT
GTCACGGGCAAGCGAGCACAGCTCCGTGCCAAAGCTAACTAA

Library Parental gene expression (RPM)
SRP051959_colon 30 .40 RPM
SRP051959_heart 31 .71 RPM
SRP051959_kidney 27 .67 RPM
SRP051959_liver 34 .85 RPM
SRP051959_lung 29 .20 RPM
SRP051959_lymph_node 31 .94 RPM
SRP051959_skeletal_muscle 50 .14 RPM
SRP051959_spleen 34 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007498 possible_ortholog 1 retrogene
retro_cfam_2070,
Choloepus hoffmanni ENSCHOG00000006521 possible_ortholog 1 retrogene
retro_chof_271,
Cavia porcellus ENSCPOG00000015439 possible_ortholog 1 retrogene
retro_cpor_1143,
Echinops telfairi ENSETEG00000001922 possible_ortholog 1 retrogene
retro_etel_1101,
Homo sapiens ENSG00000125977 ortholog_one2many 3 retrogenes
retro_hsap_2176, retro_hsap_2260, retro_hsap_713,
Gorilla gorilla ENSGGOG00000015546 ortholog_one2many 5 retrogenes
retro_ggor_1683, retro_ggor_1726, retro_ggor_2007, retro_ggor_280, retro_ggor_604,
Microcebus murinus ENSMICG00000006944 ortholog_one2many 1 retrogene
retro_mmur_1583,
Myotis lucifugus ENSMLUG00000005335 possible_ortholog 1 retrogene
retro_mluc_604,
Macaca mulatta ENSMMUG00000018095 ortholog_one2many 1 retrogene
retro_mmul_1483,
Monodelphis domestica ENSMODG00000002805 ortholog_one2many 5 retrogenes
retro_mdom_1981, retro_mdom_365, retro_mdom_368, retro_mdom_370, retro_mdom_837,
Mus musculus ENSMUSG00000074656 possible_ortholog 1 retrogene
retro_mmus_3200,
Nomascus leucogenys ENSNLEG00000010034 ortholog_one2many 2 retrogenes
retro_nleu_2242, retro_nleu_466,
Otolemur garnettii ENSOGAG00000001417 ortholog_many2many 1 retrogene
retro_ogar_196,
Pongo abelii ENSPPYG00000010933 ortholog_many2many 2 retrogenes
retro_pabe_1955, retro_pabe_2421,
Pan troglodytes ENSPTRG00000013412 ortholog_one2many 2 retrogenes
retro_ptro_1600, retro_ptro_508,
Rattus norvegicus ENSRNOG00000017447 possible_ortholog 1 retrogene
retro_rnor_2395,
Tupaia belangeri ENSTBEG00000009970 possible_ortholog 2 retrogenes
retro_tbel_1505, retro_tbel_2508,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_697 83.10 84.68
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_4196 87.24 86.79
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000018334 retrocopies