RetrogeneDB ID:

retro_ggor_2093

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:38264778..38265485(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PSME2
Ensembl ID:ENSGGOG00000016025
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2093
GCCAAGCCTTGTGGTGGGTGCCTGAGCAGGGAGGCCCACACCCAGGTACATGTCTTCAGGCAAGAGCTTTCCCAAGAAGC
CAAGGAATTCCTCTACAGATTCTTGCCACAGAAAATCATATACCTGCATAGGCCTTGCAAAAAGATTCCCTCATTGTAGC
TTCCTGACCTCCCTCCGGGCCCCACTGGACATCCCCATCCCAGAACCCCCACCCAAGGATGAGGTAGAAACAGAGAGGCA
AGAGAAGAAAGAAGTCCTTGAGTGTGGATTTCTCCCTGGGAATGAGAAGGTCCTGTCGCTGCTTGCCATGGTTAAGCCAG
AAGTCTGGATTCTCAAAGAGAAATGCATTCTGGTGATCACATGGATCCAGCACCTGATCCCCAAGACTGAGGATCCAAAT
GATTTGGAGTAGCAATCCAGGAGAAGGTGCTGGAGAGGGTGAATGCAGTTAAGACCAAAGTGCAAGCCGTCCAGACAACC
ATTTCCAAATACTTCTCAGAACATGGGGATGCTGTGGCCAAGGCCTCCAAGGAGACCCATGTAATGGATTACCAGGCGTT
GGTGCAAAAGTGAGATAAGACAGCCTATGGGGAGGTCAAGGCCAGGGAACTGGACCTGAAGGCCTTCTGTGCTGAGCTTT
ATCATATCATCAGCACCAACCTGGAGAAAACCGCAACCCAAAAGGTGAAGAGAAACCATTTGTGTAC

ORF - retro_ggor_2093 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.34 %
Parental protein coverage: 99.58 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQ-LLQEDSLNVAD-LTSLRAPLDIPIP
AKPCG..LS.EA..QV.VFRQ.L.QEA.EFLYRFLPQKIIYL....LQ.DSL.VA..LTSLRAPLDIPIP
RetrocopyAKPCGGCLSREAHTQVHVFRQELSQEAKEFLYRFLPQKIIYLHR<ALQKDSLIVAS<LTSLRAPLDIPIP
ParentalDPPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDGND-F
.PPPKD.E.ET..QEKKEV..CGFLPGNEKVLSLLA.VKPEVW.LKEKCILVITWIQHLIPK.ED.ND.F
RetrocopyEPPPKD-EVETERQEKKEVLECGFLPGNEKVLSLLAMVKPEVWILKEKCILVITWIQHLIPKTEDPND<F
ParentalGVAIQEKVLERVNAVKTKVEAFQTTISKYFSECGDAVAKASKETHVMDYRALVHQ-DEAAYGELRAMVLD
GVAIQEKVLERVNAVKTKV.A.QTTISKYFSE.GDAVAKASKETHVMDY.ALV...D..AYGE..A..LD
RetrocopyGVAIQEKVLERVNAVKTKVQAVQTTISKYFSEHGDAVAKASKETHVMDYQALVQK*DKTAYGEVKARELD
ParentalLRAFYAELYHIISSNLEKTV-HPKGEEKPSMY
L.AF.AELYHIIS.NLEKT...PKGEEKP..Y
RetrocopyLKAFCAELYHIISTNLEKTA<NPKGEEKPFVY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 17 .98 RPM
SRP007412_cerebellum 0 .00 RPM 31 .05 RPM
SRP007412_heart 0 .00 RPM 18 .07 RPM
SRP007412_kidney 0 .04 RPM 66 .20 RPM
SRP007412_liver 0 .00 RPM 67 .03 RPM
SRP007412_testis 0 .00 RPM 28 .08 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2093 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2093 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3033
Pan troglodytes retro_ptro_2046
Pongo abelii retro_pabe_2512
Macaca mulatta retro_mmul_1940

Parental genes homology:
Parental genes homology involve 9 parental genes, and 29 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000071673 retrocopies
Homo sapiens ENSG000001009114 retrocopies
Gorilla gorilla ENSGGOG00000016025 4 retrocopies
Macaca mulatta ENSMMUG000000124734 retrocopies
Mus musculus ENSMUSG000000791971 retrocopy
Nomascus leucogenys ENSNLEG000000152604 retrocopies
Otolemur garnettii ENSOGAG000000165841 retrocopy
Pongo abelii ENSPPYG000000056844 retrocopies
Pan troglodytes ENSPTRG000000061964 retrocopies



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