RetrogeneDB ID: | retro_ggor_2093 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:38264778..38265485(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSME2 | ||
Ensembl ID: | ENSGGOG00000016025 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.34 % |
Parental protein coverage: | 99.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | AKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQ-LLQEDSLNVAD-LTSLRAPLDIPIP |
AKPCG..LS.EA..QV.VFRQ.L.QEA.EFLYRFLPQKIIYL....LQ.DSL.VA..LTSLRAPLDIPIP | |
Retrocopy | AKPCGGCLSREAHTQVHVFRQELSQEAKEFLYRFLPQKIIYLHR<ALQKDSLIVAS<LTSLRAPLDIPIP |
Parental | DPPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDGND-F |
.PPPKD.E.ET..QEKKEV..CGFLPGNEKVLSLLA.VKPEVW.LKEKCILVITWIQHLIPK.ED.ND.F | |
Retrocopy | EPPPKD-EVETERQEKKEVLECGFLPGNEKVLSLLAMVKPEVWILKEKCILVITWIQHLIPKTEDPND<F |
Parental | GVAIQEKVLERVNAVKTKVEAFQTTISKYFSECGDAVAKASKETHVMDYRALVHQ-DEAAYGELRAMVLD |
GVAIQEKVLERVNAVKTKV.A.QTTISKYFSE.GDAVAKASKETHVMDY.ALV...D..AYGE..A..LD | |
Retrocopy | GVAIQEKVLERVNAVKTKVQAVQTTISKYFSEHGDAVAKASKETHVMDYQALVQK*DKTAYGEVKARELD |
Parental | LRAFYAELYHIISSNLEKTV-HPKGEEKPSMY |
L.AF.AELYHIIS.NLEKT...PKGEEKP..Y | |
Retrocopy | LKAFCAELYHIISTNLEKTA<NPKGEEKPFVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 17 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .05 RPM |
SRP007412_heart | 0 .00 RPM | 18 .07 RPM |
SRP007412_kidney | 0 .04 RPM | 66 .20 RPM |
SRP007412_liver | 0 .00 RPM | 67 .03 RPM |
SRP007412_testis | 0 .00 RPM | 28 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3033 |
Pan troglodytes | retro_ptro_2046 |
Pongo abelii | retro_pabe_2512 |
Macaca mulatta | retro_mmul_1940 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies |