Parental gene: | PSME2, ENSG00000100911 |
| Aliases: | PSME2, PA28B, PA28beta, REGbeta |
| Description: | proteasome (prosome, macropain) activator subunit 2 (PA28 beta) [Source:HGNC Symbol;Acc:9569] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 14:24612573..24616779(-) |
>ENSG00000100911
ATGGCCAAGCCGTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGAGGTCTTCAGACAGAATCTTTTCCAGGA
GGCTGAGGAATTCCTCTACAGATTCTTGCCACAGAAAATCATATACCTGAATCAGCTCTTGCAAGAGGACTCCCTCAATG
TGGCTGACTTGACTTCCCTCCGGGCCCCACTGGACATCCCCATCCCAGACCCTCCACCCAAGGATGATGAGATGGAAACA
GATAAGCAGGAGAAGAAAGAAGTCCATAAGTGTGGATTTCTCCCTGGGAATGAGAAAGTCCTGTCCCTGCTTGCCCTGGT
TAAGCCAGAAGTCTGGACTCTCAAAGAGAAATGCATTCTGGTGATTACATGGATCCAACACCTGATCCCCAAGATTGAAG
ATGGAAATGATTTTGGGGTAGCAATCCAGGAGAAGGTGCTGGAGAGGGTGAATGCCGTCAAGACCAAAGTGGAAGCTTTC
CAGACAACCATTTCCAAGTACTTCTCAGAACGTGGGGATGCTGTGGCCAAGGCCTCCAAGGAGACTCATGTAATGGATTA
CCGGGCCTTGGTGCATGAGCGAGATGAGGCAGCCTATGGGGAGCTCAGGGCCATGGTGCTGGACCTGAGGGCCTTCTATG
CTGAGCTTTATCATATCATCAGCAGCAACCTGGAGAAAATTGTCAACCCAAAGGGTGAAGAAAAGCCATCTATGTACTGA
ATGGCCAAGCCGTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGAGGTCTTCAGACAGAATCTTTTCCAGGA
GGCTGAGGAATTCCTCTACAGATTCTTGCCACAGAAAATCATATACCTGAATCAGCTCTTGCAAGAGGACTCCCTCAATG
TGGCTGACTTGACTTCCCTCCGGGCCCCACTGGACATCCCCATCCCAGACCCTCCACCCAAGGATGATGAGATGGAAACA
GATAAGCAGGAGAAGAAAGAAGTCCATAAGTGTGGATTTCTCCCTGGGAATGAGAAAGTCCTGTCCCTGCTTGCCCTGGT
TAAGCCAGAAGTCTGGACTCTCAAAGAGAAATGCATTCTGGTGATTACATGGATCCAACACCTGATCCCCAAGATTGAAG
ATGGAAATGATTTTGGGGTAGCAATCCAGGAGAAGGTGCTGGAGAGGGTGAATGCCGTCAAGACCAAAGTGGAAGCTTTC
CAGACAACCATTTCCAAGTACTTCTCAGAACGTGGGGATGCTGTGGCCAAGGCCTCCAAGGAGACTCATGTAATGGATTA
CCGGGCCTTGGTGCATGAGCGAGATGAGGCAGCCTATGGGGAGCTCAGGGCCATGGTGCTGGACCTGAGGGCCTTCTATG
CTGAGCTTTATCATATCATCAGCAGCAACCTGGAGAAAATTGTCAACCCAAAGGGTGAAGAAAAGCCATCTATGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 69 .10 RPM |
| bodymap2_lung | 95 .73 RPM |
| bodymap2_breast | 35 .10 RPM |
| bodymap2_adipose | 41 .51 RPM |
| bodymap2_adrenal | 115 .02 RPM |
| bodymap2_skeletal_muscle | 19 .08 RPM |
| bodymap2_thyroid | 45 .01 RPM |
| bodymap2_prostate | 56 .55 RPM |
| bodymap2_colon | 36 .04 RPM |
| bodymap2_testis | 46 .13 RPM |
| bodymap2_brain | 19 .60 RPM |
| bodymap2_heart | 30 .94 RPM |
| bodymap2_white_blood_cells | 122 .04 RPM |
| bodymap2_lymph_node | 77 .28 RPM |
| bodymap2_ovary | 62 .61 RPM |
| bodymap2_kidney | 92 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007167 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000131467 | within_species_paralog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000016025 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000012473 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000079197 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015260 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016584 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005684 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000006196 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1200 | 93.06 | 90.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2999 | 84.67 | 56.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_3033 | 80.17 | 99.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_3222 | 93.72 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000100911 retrocopies