RetrogeneDB ID: | retro_mmul_1229 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:36931450..36931985(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4214 | ||
Ensembl ID: | ENSMMUG00000012473 | ||
Aliases: | None | ||
Description: | proteasome activator complex subunit 2 [Source:RefSeq peptide;Acc:NP_001244558] |
Percent Identity: | 66.49 % |
Parental protein coverage: | 76.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LPQKIIYLNQLLQEDS-LNVADLTSLRAPLDIPIPDPPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLL |
L.QKI..L.QLL..DS.L.VADLTSL.APLDIPIP..PPKD.EMETDK..KKEV.....L.G.EKVLSLL | |
Retrocopy | LQQKITHLSQLL--DS<LCVADLTSLQAPLDIPIPESPPKDEEMETDKR-KKEVLTRRCLAGSEKVLSLL |
Parental | ALVKPEVWTLKEKCILVITWIQHLIPKIEDGND-FGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGD |
A.VKPE.WTLKE.CILV.T.IQHLI.K..DGND.FG...QEKVLERVNAVKTKVEAFQTT....FS.R.D | |
Retrocopy | APVKPEGWTLKERCILVMTGIQHLISKSKDGND<FGGSLQEKVLERVNAVKTKVEAFQTTTFEGFSGRAD |
Parental | AVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAELYH |
AVA.ASKE..........HE.D...YG.LRA.V.D...FYAE.Y. | |
Retrocopy | AVAAASKEPMEWVPGPRGHE*D-GTYGGLRATVQDPSVFYAEHYY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 8 .40 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .27 RPM |
SRP007412_heart | 0 .06 RPM | 17 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .40 RPM |
SRP007412_liver | 0 .00 RPM | 35 .94 RPM |
SRP007412_testis | 0 .00 RPM | 8 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies |