RetrogeneDB ID: | retro_ggor_2188 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:81285019..81285735(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000022927 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSME2 | ||
Ensembl ID: | ENSGGOG00000016025 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSLRAPLDIPIPD |
MAKPCGVRLSGEA.KQ.EVFRQNLFQEAEEFL..FLP.KIIYLNQLLQEDSLNVADLTSLRAPLD.PIPD | |
Retrocopy | MAKPCGVRLSGEALKQAEVFRQNLFQEAEEFLCGFLPRKIIYLNQLLQEDSLNVADLTSLRAPLDVPIPD |
Parental | PPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDGNDFGV |
PPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSL.ALVKPEVWTLKEKCILVITWIQHLIPKI.DGN.FGV | |
Retrocopy | PPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLFALVKPEVWTLKEKCILVITWIQHLIPKIDDGNEFGV |
Parental | AIQEKVLERVNAVKTKVEAFQTTISKYFSECGDAVAKASKETHYLMDYRALVHERDEAAYGELRAMVLDL |
AIQEKVLERVNAV.TKVEAFQTTISKYFSE.GDAVAKAS.ETH..MDYRALVHERDEAA.GELRAMVLDL | |
Retrocopy | AIQEKVLERVNAVETKVEAFQTTISKYFSEHGDAVAKASEETH-VMDYRALVHERDEAACGELRAMVLDL |
Parental | RAFYAELYH-IISSNLEKIVNPKGEEKPSMY |
RAFYAELYH..ISSNLEKIVNPKGEEKPSMY | |
Retrocopy | RAFYAELYH<FISSNLEKIVNPKGEEKPSMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .05 RPM | 17 .98 RPM |
SRP007412_cerebellum | 2 .32 RPM | 31 .05 RPM |
SRP007412_heart | 1 .28 RPM | 18 .07 RPM |
SRP007412_kidney | 6 .26 RPM | 66 .20 RPM |
SRP007412_liver | 4 .91 RPM | 67 .03 RPM |
SRP007412_testis | 2 .80 RPM | 28 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3222 |
Pan troglodytes | retro_ptro_2172 |
Pongo abelii | retro_pabe_2669 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies |