RetrogeneDB ID: | retro_mmul_1940 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:32977795..32978364(-) | ||
Located in intron of: | ENSMMUG00000000237 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4214 | ||
Ensembl ID: | ENSMMUG00000012473 | ||
Aliases: | None | ||
Description: | proteasome activator complex subunit 2 [Source:RefSeq peptide;Acc:NP_001244558] |
Percent Identity: | 73.85 % |
Parental protein coverage: | 80.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVAD-LTSLRAPLDIPIPD |
AKPCG..LS.EAR.QV.VFRQ.L.QE..EFLYRFLPQKIIY..Q.LQ.DSL.VA..LTSL.APLDI.IP. | |
Retrocopy | AKPCGGCLSREARTQVPVFRQELSQEGKEFLYRFLPQKIIYPHQALQNDSLIVAA<LTSLQAPLDISIPE |
Parental | PPPKDDEMETDKQE-KKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDGND-F |
PPPKD.E.ET.KQE..K......F..G....LSLLA.V.PEVW.LKEKC.L.ITWIQHLIPK.EDGND.F | |
Retrocopy | PPPKD-EVETEKQE>RKKSLSVDFSLGMRR-LSLLAMVTPEVWILKEKCMLMITWIQHLIPKTEDGND<F |
Parental | GVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHE |
GV.IQE.VLERVNAVKTKVEAFQTTISKYFSE.GDAVAKASKETHV..YR.LV.. | |
Retrocopy | GVVIQEMVLERVNAVKTKVEAFQTTISKYFSEHGDAVAKASKETHVTVYRELVQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .40 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .27 RPM |
SRP007412_heart | 0 .00 RPM | 17 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .40 RPM |
SRP007412_liver | 0 .00 RPM | 35 .94 RPM |
SRP007412_testis | 0 .00 RPM | 8 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3033 |
Pan troglodytes | retro_ptro_2046 |
Gorilla gorilla | retro_ggor_2093 |
Pongo abelii | retro_pabe_2512 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies |